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NFC…_SCRNASEQ:SCRNASEQ:MULTIQC not completing or taking an extremely long time
bug
Something isn't working
#395
opened Nov 16, 2024 by
ohsumit
Cannot use single-end reads. Error: Missing required value: fastq_2
enhancement
New feature or request
#394
opened Nov 13, 2024 by
melissamlwong18
Check that indices can be specified as expected
bug
Something isn't working
#393
opened Nov 7, 2024 by
grst
MuData output for multiomics data
enhancement
New feature or request
#392
opened Nov 7, 2024 by
grst
Cell Ranger ARC null path value
bug
Something isn't working
cellranger-arc
#389
opened Nov 2, 2024 by
ChristopherBarrington
Add auto chemistry detection for solving mixture of 10X scRNA-Seq chemistries (alevin, kallisto, star)
enhancement
New feature or request
#388
opened Oct 31, 2024 by
wzheng0520
Update documentation for other technologies
documentation
enhancement
New feature or request
#386
opened Oct 28, 2024 by
LeonHafner
2 tasks
cellranger multi => MTX_TO_H5AD: input file name collision
bug
Something isn't working
cellranger-multi
#383
opened Oct 17, 2024 by
nick-youngblut
CellRanger Multi => add combined h5ad files in New feature or request
mtx_conversions
enhancement
#378
opened Oct 8, 2024 by
nick-youngblut
CellRanger Multi => add to MultiQC report
enhancement
New feature or request
#377
opened Oct 8, 2024 by
nick-youngblut
cellranger multi => pipeline creates STAR index that does not match probeset
bug
Something isn't working
#375
opened Oct 7, 2024 by
nick-youngblut
cellrangerarc test failing - null path?
bug
Something isn't working
cellranger-arc
#374
opened Oct 4, 2024 by
davhum
cellranger-multi => incorrect feature_type assigned to samples
bug
Something isn't working
#373
opened Oct 3, 2024 by
nick-youngblut
results from awsmegatests missing on homepage
bug
Something isn't working
#367
opened Sep 2, 2024 by
asp8200
Standardize h5ad/seurat var gene annotations across aligners
enhancement
New feature or request
#363
opened Aug 15, 2024 by
alexblaessle
cellranger count => Your reference does not contain the expected files
bug
Something isn't working
#345
opened Jul 11, 2024 by
nick-youngblut
Implement sample demultiplexing followed by VDJ + feature barcode analysis per sample
enhancement
New feature or request
#343
opened Jun 28, 2024 by
herpov
cellranger_count.py: capture stderr and stdout
enhancement
New feature or request
quality & consistency
improve quality and reduce maintenance burden
#341
opened Jun 24, 2024 by
nick-youngblut
scrnaseq will not recognize my genome file path
bug
Something isn't working
documentation
#339
opened Jun 20, 2024 by
jjovelc
Trimming R1 fast files in all aligners
enhancement
New feature or request
#333
opened May 24, 2024 by
ChristopherMancuso
cellranger-multi implementation follow-up
enhancement
New feature or request
#332
opened May 23, 2024 by
fmalmeida
5 tasks
Running 'cellranger-arc count' with existing genome index
enhancement
New feature or request
#331
opened May 17, 2024 by
ashwinikumarkulkarni
Sample merging does not work if files are named the same
bug
Something isn't working
bug-confirmed
#324
opened May 4, 2024 by
nick-youngblut
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