cellranger-multi => create-bam option

[nick-youngblut]

Description of feature

As stated in the 10X docs:

Important: In the examples below, we set create-bam to "false" so Cell Ranger will not generate a BAM file. This setting is recommended for Fixed RNA Profiling libraries and will reduce both the total computation time for the pipestance and the size of the output directory.

It appears that there is currently no way of setting create-bam to true/false via the scrnaseq pipeline params.

[kopichris]

I would like to have this added as well. Happy to open a pull request for this @nick-youngblut if you don't have any objections!

[grst]

@kopichris, happy to accept such a PR

[nick-youngblut]

@kopichris that sounds great! I could also possibly add it, but I probably couldn't get to it for a few days.

[kopichris]

@kopichris that sounds great! I could also possibly add it, but I probably couldn't get to it for a few days.

@nick-youngblut I would love the opportunity to make my first pull request if possible :D!

[grst]

Fixed in #387 on dev