start adding wf example #1 🚧

nfdi4plants · Jul 4, 2024 · 844c5c4 · 844c5c4
1 parent 8c9f449
commit 844c5c4
Showing 1 changed file with 106 additions and 2 deletions.
diff --git a/profile/arc_cwl_ro_crate.md b/profile/arc_cwl_ro_crate.md
@@ -1,6 +1,6 @@
 # ISA RO-Crate Profile
 
-* Version: 
+* Version: 0.1
 * Permalink: 
 * Authors
   *  - https://orcid.org/
@@ -20,4 +20,108 @@ flowchart TD
 
 ## Example ro-crate-metadata.json
 
-_TODO: simple example and a link to a more complete example_
+### Workflow
+
+
+
+### Workflow Invocation
+
+```json
+{ "@context": "https://w3id.org/ro/crate/1.1/context",
+  "@graph": [
+    {
+      "@type": "CreativeWork",
+      "@id": "ro-crate-metadata.json",
+      "conformsTo": { "@id": "https://w3id.org/ro/crate/1.1" },
+      "about": { "@id": "./" }
+    },
+    {
+      "@id": "./workflows",
+      "@type": "Dataset",
+      "hasPart": [
+        { "@id": "workflows/workflow.cwl" }
+      ]
+    },
+    {
+      "@id": "workflows/workflow.cwl",
+      "@type": [ "File", "SoftwareSourceCode", "ComputationalWorkflow" ],
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/ComputationalWorkflow/0.5-DRAFT-2020_07_21/" },
+      "name": "Column Addition",
+      "programmingLanguage": [
+        { "@id": "#FSharp" },
+        { "@id": "https://w3id.org/workflowhub/workflow-ro-crate#cwl" }
+      ],
+      "creator": { "@id": "#timo" },
+      "dateCreated": "2024-02-05",
+      "input": [
+        { "@id": "#1" },
+        { "@id": "#2" }
+      ],
+      "output": [
+        { "@id": "#3" }
+      ]
+      "about": [
+        # TODO add some example metadata
+        # Lab process
+      ]
+    },
+    {
+      "@id": "#1",
+      "@type": "FormalParameter",
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/FormalParameter/0.1-DRAFT-2020_07_21/" },
+      "name": "intensity_table",
+      "valueRequired": true,
+      "additionalType": { "@id": "http://edamontology.org/data_2976" },
+      "format": { "@id": "http://edamontology.org/format_3752" }
+    },
+    {
+      "@id": "#2",
+      "@type": "FormalParameter",
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/FormalParameter/0.1-DRAFT-2020_07_21/" },
+      "name": "file_name"
+    },
+    {
+      "@id": "#3",
+      "@type": "FormalParameter",
+      "conformsTo": { "@id": "https://bioschemas.org/profiles/FormalParameter/0.1-DRAFT-2020_07_21/" },
+      "name": "summed_intensities",
+      "additionalType": { "@id": "http://edamontology.org/data_2976" },
+      "encodingFormat": { "@id": "http://edamontology.org/format_3475" }
+    },
+    {
+      "@id": "https://w3id.org/workflowhub/workflow-ro-crate#cwl",
+      "@type": "computerlanguage",
+      "name": "common workflow language",
+      "alternatename": "cwl",
+      "identifier": {
+        "@id": "https://w3id.org/cwl/v1.2/"
+      },
+      "url": {
+        "@id": "https://www.commonwl.org/"
+      }
+    },
+    {
+      "@id": "#FSharp",
+      "@type": "ProgrammingLanguage",
+      "name": "F Sharp",
+      "alternateName": "F#",
+      "url": "https://dotnet.microsoft.com/en-us/languages/fsharp",
+      "version": "6.0"
+    },
+    {
+      "@id": "#timo",
+      "@type": "Person",
+      "name": "Timo Mühlhaus"
+    },
+    {
+      "@id": "http://edamontology.org/format_3752",
+      "@type": "Thing",
+      "name": "Comma-separated values"
+    },
+    {
+      "@id": "http://edamontology.org/format_3475",
+      "@type": "Thing",
+      "name": "Tab-separated values"
+    }
+}
+```