Merge pull request #55 from nfdi4plants/resources

Resources

package.json

@@ -18,6 +18,7 @@
     "astro": "^4.15.4",
     "astro-icon": "^1.1.1",
     "astro-pagefind": "^1.6.0",
+    "bibtex-js-parser": "^1.1.6",
     "mdast-util-directive": "^3.0.0",
     "rehype-autolink-headings": "^7.1.0",
     "rehype-slug": "^6.0.0",

src/components/Publication.astro

@@ -0,0 +1,43 @@
+---
+import {BibtexParser} from "bibtex-js-parser";
+import { Icon } from 'astro-icon/components'
+import fs from 'node:fs';
+
+
+interface PublicationProps {
+  sourceFile: string
+}
+
+const {sourceFile} = Astro.props as PublicationProps;
+
+const data = fs.readFileSync(sourceFile,{ encoding: 'utf8', flag: 'r' });
+
+const bibJSON = BibtexParser.parseToJSON(data)[0];
+const authorList = bibJSON.author!.split(" and ")
+---
+
+<div class="card-bordered mb-4">
+  <div class="card-body">
+    <h3 class="card-title">
+      {
+        bibJSON.doi
+          ? <a href={`https://doi.org/${bibJSON.doi}`}>{bibJSON.title}</a>
+          : bibJSON.title
+      }
+    </h3>
+    <div class="flex flex gap-2">
+      {bibJSON.publisher && <div class="badge badge-ghost">{bibJSON.publisher}</div>}
+      {bibJSON.journal && <div class="badge badge-ghost">{bibJSON.journal}</div>}
+      {bibJSON.journal && <div class="badge badge-ghost">{bibJSON.note}</div>}
+    </div>
+    <details class="collapse collapse-arrow">
+      <summary class="collapse-title text-s font-medium">{authorList[0]}<i> et al.</i></summary>
+      <div class="collapse-content">
+        <h3>Authors</h3>
+        <p>{bibJSON.author}</p>
+        <h3>Abstract</h3>
+        <p>{bibJSON.abstract}</p>
+      </div>
+    </details>
+  </div>
+</div>

src/content/publications/datahub.bib

@@ -0,0 +1,15 @@
+@article{datahub,
+author = {Weil, Heinrich Lukas and Schneider, Kevin and Tschöpe, Marcel and Bauer, Jonathan and Maus, Oliver and Frey, Kevin and Brilhaus, Dominik and Martins Rodrigues, Cristina and Doniparthi, Gajendra and Wetzels, Florian and Lukasczyk, Jonas and Kranz, Angela and Grüning, Björn and Zimmer, David and Deßloch, Stefan and von Suchodoletz, Dirk and Usadel, Björn and Garth, Christoph and Mühlhaus, Timo},
+title = {PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research},
+journal = {The Plant Journal},
+volume = {116},
+number = {4},
+pages = {974-988},
+keywords = {ARC Annotated research context, DataHUB, FAIR, FAIR digital object, research data management},
+doi = {https://doi.org/10.1111/tpj.16474},
+url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.16474},
+eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.16474},
+abstract = {SUMMARY In modern reproducible, hypothesis-driven plant research, scientists are increasingly relying on research data management (RDM) services and infrastructures to streamline the processes of collecting, processing, sharing, and archiving research data. FAIR (i.e., findable, accessible, interoperable, and reusable) research data play a pivotal role in enabling the integration of interdisciplinary knowledge and facilitating the comparison and synthesis of a wide range of analytical findings. The PLANTdataHUB offers a solution that realizes RDM of scientific (meta)data as evolving collections of files in a directory – yielding FAIR digital objects called ARCs – with tools that enable scientists to plan, communicate, collaborate, publish, and reuse data on the same platform while gaining continuous quality control insights. The centralized platform is scalable from personal use to global communities and provides advanced federation capabilities for institutions that prefer to host their own satellite instances. This approach borrows many concepts from software development and adapts them to fit the challenges of the field of modern plant science undergoing digital transformation. The PLANTdataHUB supports researchers in each stage of a scientific project with adaptable continuous quality control insights, from the early planning phase to data publication. The central live instance of PLANTdataHUB is accessible at (https://git.nfdi4plants.org), and it will continue to evolve as a community-driven and dynamic resource that serves the needs of contemporary plant science.},
+year = {2023},
+note = {open access}
+}

src/pages/details/resources.mdx

@@ -0,0 +1,46 @@
+---
+layout: ../../layouts/MarkdownLayout.astro
+title: 'ARC Resources'
+pubDate: 2024-09-16
+description: 'ARC related resources from the community for the community.'
+author: 'Kevin Schneider'
+image:
+    url: 'https://docs.astro.build/assets/rose.webp'
+    alt: 'The Astro logo on a dark background with a pink glow.'
+tags: ["tools", "services", "community"]
+---
+
+import Publication from '../../components/Publication.astro';
+
+**_ARC related resources from the community for the community._**
+
+Benefit from the accumulated knowledge of data stewards, developers, and researchers who have contributed to the ARC ecosystem.
+This page aggregates a selection of resources such as educational videos, publications, wikis, and more that have been shared by the ARC community.
+
+## Articles and Wikis
+
+### DataPLANT knowledgebase
+
+The [DataPLANT knowledgebase](https://knowledgebase.nfdi4plants.org/) explains fundamental topics on RDM and how these aspects are implemented by the consortium to support plant researchers with RDM tools and services.
+
+Some highlighted articles:
+
+- [Research Data management](https://nfdi4plants.github.io/nfdi4plants.knowledgebase/docs/fundamentals/ResearchDataManagement.html)
+- [Ontology Service Landscape](https://nfdi4plants.github.io/nfdi4plants.knowledgebase/docs/implementation/OntologyServiceLandscape.html)
+- [Teaching materials](https://nfdi4plants.github.io/nfdi4plants.knowledgebase/docs/teaching-materials/index.html)
+
+## Educational Videos
+
+### DataPLANT Youtube Channel
+
+DataPLANT has a [youtube channel](https://www.youtube.com/@nfdi4plants816) with educational videos on ARCs, quickstarts for tooling, and educational talks.
+
+Here are some highlights:
+- [ARCitect Quickstart playlist](https://www.youtube.com/watch?v=cC6uZkH51l4&list=PLi6d1LSow4XBZ4MKMMGOW6qDTZwe7Zg8w)
+- [CEPLAS + ARCs playlist](https://www.youtube.com/watch?v=Ay9e3mkT8R0)
+
+## Publications
+
+_a curated list of publications related to ARCS_.
+
+<Publication sourceFile="src/content/publications/datahub.bib"></Publication>

src/pages/dictionary/DataPLANT.md

@@ -0,0 +1,25 @@
+---
+layout: ../../layouts/MarkdownLayout.astro
+title: 'DataPLANT'
+pubDate: 2024-09-18
+description: 'Consortium for digitization of plant research data. more at nfdi4plants.org'
+author: 'DataPLANT community'
+image:
+    url: 'https://docs.astro.build/assets/rose.webp'
+    alt: 'The Astro logo on a dark background with a pink glow.'
+tags: ["tools", "services", "community"]
+keywords: ["DataPLANT"]
+url: "DataPLANT"
+---
+
+DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences.
+It will pave the way from classical paper publication to pure data publication as ARCs.
+
+DataPLANT is part of the [NFDI](https://www.nfdi.de/) initiative for **data as a common good for excellent research**.
+It is also known as _nfdi4plants_
+
+## DataPLANT Resources
+
+- [Website](https://www.nfdi4plants.org/)
+- [News](https://nfdi4plants.org/news.html)
+- [PLANTdataHUB, DataPLANT's reference implementation of an ARC Data Hub]({{DATAPLANT_ARC_HUB}})