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8 changes: 8 additions & 0 deletions content/publications/0.bib
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@white_paper{0,
author = {Glöckner, Frank Oliver and Diepenbroek, Michael and Felden, Janine and Overmann, Jörg and Bonn, Aletta and Gemeinholzer, Birgit and Güntsch, Anton and König-Ries, Birgitta and Seeger, Bernhard and Pollex-Krüger, Annette and Fluck, Juliane and Pigeot, Iris and Kirsten Toralf and Mühlhaus, Timo and Wolf, Christof and Heinrich, Uwe and Steinbeck, Christoph and Koepler, Oliver and Stegle, Oliver and Weimann, Joachim and Schörner-Sadenius, Thomas and Gutt, Christian and Stahl, Florian and Wagemann, Kurt and Schrade, Torsten and Schmitt, Robert and Eberl, Chris and Gauterin, Frank and Schultz, Martin and Bernard, Lars},
title = {Berlin Declaration on NFDI Cross-Cutting Topics (Version 1)},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.3457213},
year = {2019},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/1.bib
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@conference_poster{1,
author = {Mühlhaus, Timo and Krüger, Jens and Usadel, Björn and Martins Rodrigues, Cristina and von Suchodoletz, Dirk},
title = {DataPLANT: Driving the digital change in plant science},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.5045068},
year = {2020},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/10.bib
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@meeting_report{10,
author = {Ebert, Barbara|Fluck, Juliane|Glöckner, Frank Oliver|Koepler, Oliver|Miller, Bernhard|Schmitt, Robert|Schrade, Torsten|Stegle, Oliver|Steinbeck, Christoph|von Suchodoletz, Dirk|Wagemann, Kurt|Knebes, Jennifer|Kraft, Sophie|Seitz-Moskaliuk, Hendrik|Sure-Vetter, York|Wössner, Elena},
title = {NFDI Cross-cutting Topics Workshop Report},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.7825374},
year = {2021},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/11.bib
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@conference_paper{11,
author = {Christoph Garth| Jonas Lukasczyk| Timo Mühlhaus| Benedikt Venn| Jens Krüger| Kolja Glogowski| Cristina Martins Rodrigues| Dirk von Suchodoletz},
title = {Immutable yet evolving: ARCs for permanent sharing in the research data-time continuum},
journal = {heiDOK, Universitätsbibiothek Heidelberg},
doi = {https://doi.org/10.11588/heibooks.979.c13751},
year = {2021},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/12.bib
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@conference_paper{12,
author = {Britta Nestler| Peter F. Pelz| Robert H. Schmitt| Marco Berger| Hauke Dierend| Benjamin Farnbacher| Bernd Flemisch| Dennis Gläser| Ina Heine| Nils Hoppe| Gerald Jagusch| Roland Lachmayer| Jan Lemmer| Jan Linxweiler| Amelie I. Metzmacher| Iryna Mozgova| Nils Preuß| Manuela Richter| Stefanie Roski| Hartmut Schlenz| Michael Selzer| Christian Stemmer},
title = {Nationale Forschungsdateninfrastruktur für die Ingenieurwissenschaften (NFDI4Ing)},
journal = {heiDOK, Universitätsbibiothek Heidelberg},
doi = {https://doi.org/10.11588/heibooks.979.c13752},
year = {2021},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/13.bib
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@conference_paper{13,
author = {Timo Mühlhaus| Dominik Brilhaus| Marcel Tschöpe| Oliver Maus| Björn Grüning| Christoph Garth| Cristina Martins Rodrigues| Dirk von Suchodoletz},
title = {DataPLANT – Tools and Services to structure the Data Jungle for fundamental plant researchers},
journal = {heiDOK, Universitätsbibiothek Heidelberg},
doi = {https://doi.org/10.11588/heibooks.979.c13724},
year = {2021},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/14.bib
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@conference_paper{14,
author = {Dirk von Suchodoletz| Timo Mühlhaus| Dominik Brilhaus| Hajira Jabeen| Björn Usadel| Jens Krüger| Holger Gauza| Cristina Martins Rodrigues},
title = {Data Stewards as ambassadors between the NFDI and the community},
journal = {heiDOK, Universitätsbibiothek Heidelberg},
doi = {https://doi.org/10.11588/heibooks.979.c13750},
year = {2021},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/15.bib
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@conference_paper{15,
author = {Dirk von Suchodoletz| Ulrich Hahn| Jonathan Bauer| Kolja Glogowski| Mark Seifert},
title = {Storage for Science – Aktueller Stand und anstehende Entwicklungen eines verteilten FDM-Systems},
journal = {heiDOK, Universitätsbibiothek Heidelberg},
doi = {https://doi.org/10.11588/heibooks.979.c13741},
year = {2022},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/16.bib
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@magazine_article{16,
author = {Jens Krüger and Timo Mühlhaus and Björn Usadel and Dirk von Suchodoletz and Cristina Martins Rodrigues},
title = {DataPLANT - Platform for Research Data Management},
journal = {German Network for Bioinformatics Infrastructure (de.NBI)},
doi = {https://doi.org/10.4119/unibi/2963745},
year = {2022},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/17.bib
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@position_paper{17,
author = {Konsortialversammlung des Vereins Nationale Forschungsdateninfrastruktur (NFDI) e.V.},
title = {Stellungnahme der NFDI-Konsortien zu Basisdiensten},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.6091657},
year = {2022},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/18.bib
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@abstract{18,
author = {Klaus Rechert and Dirk von Suchodoletz},
title = {RDM and DP communities: Finding the common ground to develop a collaborative future service landscape},
journal = { },
doi = {https://2022.jcdl.org/wp-content/uploads/2022/04/DataPLANT-RDM-and-DP-communities-Finding-the-common-ground-to-develop-a-collaborative-future-service-landscape.pdf},
year = {2022},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/19.bib
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@preprint{19,
author = {Daniel Arend| Sebastian Beier| laurent bouri| Marco Brandizi| Donald Hobern| Erwan Le Floch| Timo Mühlhaus| Cyril Pommier| Stuart Owen| Philippe Rocca-Serra| Thomas Rosnet| and Stian Soiland-Reyes},
title = {BiohackEU22 Project 22: Plant Data Exchange and Standard Interoperability},
journal = {BioHackrXiv},
doi = {https://doi.org/10.37044/osf.io/c724r},
year = {2022},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/2.bib
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@press_release{2,
author = {Dirk von Suchodoletz},
title = {Pflanzliches Leben besser verstehen},
journal = { },
doi = {https://kommunikation.uni-freiburg.de/pm/2020/pflanzliches-leben-besser-verstehen},
year = {2020},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/20.bib
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@conference_paper{20,
author = {Dirk von Suchodoletz| Jonathan Bauer| Marcel Tschöpe| Holger Gauza| Michael Derntl| Steve Kaminski},
title = {Herausforderungen beim Aufbau eines föderierten Datenrepositories auf Basis von InvenioRDM},
journal = {heiDOK, Universitätsbibiothek Heidelberg},
doi = {https://doi.org/10.11588/heibooks.1288.c18069},
year = {2023},
note = {open access}
}
7 changes: 7 additions & 0 deletions content/publications/21.bib
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@conference_paper{21,
author = {},
title = {DataPLANT Extensible Ontology Service},
journal = { },
doi = {accepted for publication},
year = {2023}
}
8 changes: 8 additions & 0 deletions content/publications/22.bib
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@conference_paper{22,
author = {Leendertse, Jan| Suchodoletz, Dirk von |Semaan, Saher},
title = {Wege aus der Verantwortungsdiffusion - Vermittelnde Angebote zwischen Top-Down und Bottom-Up},
journal = {heiBOOKS},
doi = {accepted for publication},
year = {2023},
note = {open access}
}
7 changes: 7 additions & 0 deletions content/publications/23.bib
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@conference_poster{23,
author = {Brilhaus, Dominik and Kuhl, Martin and Martins Rodrigues, Cristina and Schrader, Andrea},
title = {One Resource to Teach Them All},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.8356260},
year = {2023}
}
8 changes: 8 additions & 0 deletions content/publications/24.bib
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@conference_poster{24,
author = {Engel, Judith Sophie and Kostadinov, Ivaylo and Linares, Jimena and Frey, Kevin and von Suchodoletz, Dirk and Martins Rodrigues, Cristina},
title = {Optimizing User Support through Synergistic Integration of Helpdesk Systems},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.8356211},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/25.bib
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@conference_poster{25,
author = {Rafael Gieschke and Klaus Rechert and Dirk von Suchodoletz},
title = {Integrating Long-Term Access into DataPLANT Data Management Workflows},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.8340463},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/26.bib
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@conference_poster{26,
author = {Hahn, Ulrich and von Suchodoletz, Dirk and Quandt, Markus and Gloglowski, Kolja and Seifert, Mark},
title = {bwSFS - Storage for Science: Stand und Entwicklungen eines verteilten FDM-Systems},
journal = {heiDOK, Universitätsbibiothek Heidelberg},
doi = {https://doi.org/10.11588/heidok.00029643},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/27.bib
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@conference_poster{27,
author = {Martins Rodrigues, Cristina},
title = {Managing your Research Data with DataPLANT},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.8355914},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/28.bib
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@conference_poster{28,
author = {Torsten Stöter Tobias Gottschall1 and Andrea Schrader and Peter Zentis and Monica Valencia-Schneider and Niraj Kandpal and Werner Zuschratter1 and Astrid Schauss and Timo Dickscheid and Timo Mühlhaus and Dirk von Suchodoletz},
title = {Combining the BIDS and ARC Directory Structures for Multimodal Research Data Organization},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.8349563},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/29.bib
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@journal_article{29,
author = {Heinrich Lukas Weil and Kevin Schneider and Marcel Tschöpe and Jonathan Bauer and Oliver Maus and Kevin Frey and Dominik Brilhaus and Cristina Martins Rodrigues and Gajendra Doniparthi and Florian Wetzels and Jonas Lukasczyk and Angela Kranz and Björn Grüning and David Zimmer and Stefan Deßloch and Dirk von Suchodoletz and Björn Usadel and Christoph Garth and Timo Mühlhaus},
title = {PLANTdataHUB: A collaborative platform for continuous FAIR data sharing in plant research},
journal = {the plant journal, Wiley},
doi = {https://doi.org/10.1111/tpj.16474},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/3.bib
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@press_release{3,
author = {Dirk von Suchodoletz and Usadel, Björn and Mühlhaus, Timo and Krüger, Jens},
title = {DataPLANT: Data in Plant research [Press Release]},
journal = { },
doi = {https://www.dfg.de/download/pdf/foerderung/programme/nfdi/nfdi_konferenz_2020/dataplant_abstract.pdf},
year = {2020},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/30.bib
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@journal_article{30,
author = {Dirk von Suchdoletz and Peter Brettschneider and Alexandra Axtmann and Maximilian Heber and Lars Oberländer and Jan Leendertse and Irene Schumm and Olaf Brandt and Karsten Schmidt and Livia Gertis and Michael Selzer and Robert Ulrich and Dorothea Iglezakis and Valerie Boda},
title = {Sicherstellung der Reproduzierbarkeit von Forschungsergebnissen durch Bewahrung des Zugriffs auf Forschungssoftware},
journal = {Bausteine Forschungsdatenmanagement},
doi = {https://doi.org/10.17192/bfdm.2023.5.8555},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/31.bib
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@white_paper{31,
author = {Lisa Amelung and Verena Anthofer and Renita Danabalan and Évariste Demandt and Barbara Ebert and Elisabeth Elschner and Sara Espinoza and Jan Eufinger and Stefanie Fuchsloch and Barbara Götz and Christin Henzen and Jo-hannes Hunold and Theresa Idda and Lukas Jansen and Ulrich Krieger and Cristina M. Rodrigues and Maria Meister and Bernhard Miller and Sarah Pittroff and Christian Popp and Aleksandra Pushkina and Nicole Schatlowski and Sonja Schimmler and Christiane Schneide and Thomas Schörner and Thorsten Schwetje and Jörg Seegert and Thorsten Trippel and Judith Weber and Elena Wössner and Wolf Zinke},
title = {White Paper: Interim Report Reference},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.7688729},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/32.bib
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@white_paper{32,
author = {Lisa Amelung and Eva Bodenschatz and Renita Danabalan and Évariste Demandt and Ralf Depping and Franziska Eberl and Barbara Ebert and Sara Espinoza and Stefanie Fuchsloch and Michael Goedicke and Barbara Götz and Cor-dula Hege and Christine Hennig and Christin Henzen and Johannes Hunold and Lukas Jansen and Ulrich Krieger and Cristina Martins Rodrigues and Bernhard Miller and Daniel Nüst and Nicole Schatlowski and Alina Schleuß and Christiane Schneide and Annett Schwarz and Thorsten Schwetje and Jörg Seegert and Thorsten Trippel and Elena Wössner and Wolf Zinke},
title = {White Paper: Umgang mit Zielen der BLV als Grundlage für die Strukturevaluation},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.8192533},
year = {2023},
note = {open access}
}
7 changes: 7 additions & 0 deletions content/publications/33.bib
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@abstract{33,
author = {Dirk von Suchodoletz and Jonathan Bauer and Marcel Tschöpe},
title = {DataPLANT Cloud Oriented Service Infrastructure},
journal = {TIB Open Publishing},
doi = {https://doi.org/10.52825/CoRDI.v1i.414},
year = {2023}
}
7 changes: 7 additions & 0 deletions content/publications/34.bib
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@abstract{34,
author = {Dirk von Suchodoletz and Yi Sun and Jean-Karim Hériché and Manuel Messner},
title = {Improving the Research Desktop Experience for OpenStack VDI},
journal = {TIB Open Publishing},
doi = {https://doi.org/10.52825/cordi.v1i.413},
year = {2023}
}
8 changes: 8 additions & 0 deletions content/publications/35.bib
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@preprint{35,
author = {Daniel Arend and Sebastian Beier and Dominik Brilhaus and Hannah Dörpholz and Manuel Feser and Kevin Frey and Patrick König and Oliver Maus and DennisPsaroudakis and Cristina Martins Rodrigues and Andrea Schrader and ElisaSenger and Heinrich Lukas Weil},
title = {Improving Metadata Collection and Aggregation in Plant Phenotyping Experiments with MIAPPE Wizard and DataPLANT},
journal = {BioHackrXiv},
doi = {https://doi.org/10.37044/osf.io/ekhdw},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/36.bib
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@conference_paper{36,
author = {Kathryn Dumschott and Hannah Dörpholz and Kevin Frey and Marcel Tschöpe and Heinrich Lukas Weil and Timo Mühlhaus and Dirk von Suchodoletz and Björn Usadel and Angela Kranz},
title = {DataPLANT- Harnessing the power of ontologies for FAIR research data management},
journal = {heiBOOKS},
doi = {https://doi.org/10.11588/heibooks.1288.c18067},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/37.bib
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@review{37,
author = {Kathryn Dumschott and Hannah Dörpholz and Marie-Angélique Laporte and Dominik Brilhaus and Andrea Schrader and Björn Usadel and Steffen Neumann and Elizabeth Arnaud and Angela Kranz},
title = {Ontologies for increasing the FAIRness of plant research data},
journal = {Frontiers Media S.A.},
doi = {https://doi.org/10.3389/fpls.2023.1279694},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/38.bib
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@journal_article{38,
author = {Xiao-Ran Zhou and Sebastian Beier and Dominik Brilhaus and Cristina Martins Rodrigues and Timo Mühlhaus and Dirk von Suchodoletz and Richard M. Twyman and Björn Usadel and Angela Kranz},
title = {DataPLAN: A Web-Based Data Management Plan Generator for the Plant Sciences},
journal = {MDPI},
doi = {https://doi.org/10.3390/data8110159},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/39.bib
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@table{39,
author = {Amelung, Lisa and Bodenschatz, Eva and Danabalan, Renita and Demandt, Évariste and Depping, Ralf and Eberl, Franziska and Ebert, Barbara and Espinoza, Sara and Fuchsloch, Stefanie and Goedicke, Michael and Götz, Barbara and Hege, Cordula |Hennig, Christine and Henzen, Christin and Hunold, Johannes and Jansen, Lukas and Krieger, Ulrich and Rodrigues, Cristina M. and Miller, Bernhard and Schatlowski, Nicole |Schleuß, Alina and Schneide, Christiane and Schwarz, Annett and Schwetje, Thorsten and Seegert, Jörg and Trippel, Thorsten and Wössner, Elena and Zinke, Wolf},
title = {Collaborative work in NFDI},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.8296725},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/4.bib
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@conference_poster{4,
author = {Venn, Benedikt and Schneider, Kevin and Frey, Kevin and Weil, H. Lukas and Werner, Johannes and Wannenmacher, Fabian and Zajac, Thomas and von Suchodoletz, Dirk and Usadel, Björn and Krüger, Jens and Garth, Christoph and Mühlhaus, Timo},
title = {Fostering the democratization of research data by using the Annotated Research Context (ARC) as practical implementation},
journal = {heiDOK, Universitätsbibiothek Heidelberg},
doi = {https://doi.org/10.11588/heidok.00029769},
year = {2021},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/40.bib
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@abstract{40,
author = {Dominik Brilhaus and Martin Kuhl and Cristina Martins Rodrigues and Andrea Schrader},
title = {One Resource to Teach Them All},
journal = {TIB Open Publishing},
doi = {https://doi.org/10.52825/cordi.v1i.267},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/41.bib
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@conference_poster{41,
author = {Dörpholz, Hannah and Usadel, Björn and Kranz, Angela},
title = {Using Container Ontologies Built on ISA for (Meta)data Quality Analysis in Transcriptomics},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.8405208},
year = {2023},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/43.bib
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@preprint{43,
author = {Sebastian Beier and Timo Mühlhaus and Cyril Pommier and Stuart Owen and and Heinrich Lukas Weil and Florian Wetzels and Gavin Chait and Daniel Arend and Manuel Feser and Gajendra Doniparthi and Jonathan Bauer and Sveinung Gundersen and and Pável Vázquez},
title = {BioHackEU23 report: Enabling continuous RDM using Annotated Research Contexts with RO-Crate profiles for ISA},
journal = {BioHackrXiv},
doi = {https://doi.org/10.37044/osf.io/7y2jh},
year = {2024},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/44.bib
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@conference_paper{44,
author = {Holger Gauza|Steve Kaminski|Jens Kr̈uger|Fabian Paz|Halima Saker| Fabian Wannenmacher|Johannes Werner|Thomas Zajac|Olaf Brandt| Jan Kaltenbach},
title = {Distributed but Integrated: Forming a ScienceGateway from Multiple Parts},
journal = {Zenodo},
doi = {https://doi.org/10.5281/zenodo.7883190},
year = {2022},
note = {open access}
}
8 changes: 8 additions & 0 deletions content/publications/45.bib
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@conference_paper{45,
author = {Holger Gauza|Fabian Wannenmacher|Johannes Werner|Thomas Zajac|Jens Krüger},
title = {HUBzero as an open-source science gateway within the framework of the Science Data Center BioDATEN},
journal = {heiBOOKS},
doi = {https://doi.org/10.11588/heibooks.979.c13749},
year = {2021},
note = {open access}
}
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