Merge pull request #147 from nfdi4plants/publications

Add support for a publications page

README.md

@@ -4,7 +4,11 @@ This repository contains the content and content generators that result in the D
 
 ## Authoring content
 
-Please refer to [this guide](./src/content/README.md) on how to create content for this website
+- [Introduction](./src/content/README.md#introduction)
+- [How generators work](./src/content/README.md#how-generators-work)
+- [Content registry](./src/content/README.md#content-registry)
+- [Details](./src/content/README.md#details)
+- [Publications](./src/content/README.md#publications)
 
 ## Development
 

src/config.fsx

@@ -21,5 +21,6 @@ let config = {
         {Script = "imprint.fsx"; Trigger = OnFilePredicate Predicates.ImprintHeroPredicate; OutputFile = Custom Imprint.createImprintPageName}
         {Script = "datahub.fsx"; Trigger = OnFilePredicate Predicates.DatahubHeroPredicate; OutputFile = Custom Datahub.createDatahubPageName}
         {Script = "privacy.fsx"; Trigger = OnFilePredicate Predicates.PrivacyHeroPredicate; OutputFile = Custom Privacy.createPrivacyPageName}
+        {Script = "publications.fsx"; Trigger = Once; OutputFile = NewFileName "publications.html" }
     ]
 }

src/content/README.md

@@ -3,15 +3,16 @@
 <!-- TOC -->
 
 - [Introduction](#introduction)
-    - [What is markdown](#what-is-markdown)
-    - [Writing markdown content](#writing-markdown-content)
+  - [What is markdown](#what-is-markdown)
+  - [Writing markdown content](#writing-markdown-content)
 - [How generators work](#how-generators-work)
-    - [Generator metadata](#generator-metadata)
-    - [Generator markdown content](#generator-markdown-content)
-    - [Example](#example)
+  - [Generator metadata](#generator-metadata)
+  - [Generator markdown content](#generator-markdown-content)
+  - [Example](#example)
 - [Content registry](#content-registry)
 - [Details](#details)
-    - [Allowed colors](#allowed-colors)
+  - [Allowed colors](#allowed-colors)
+- [Publications](#publications)
 
 <!-- /TOC -->
 
@@ -129,4 +130,52 @@ The following base colors are allowed in content:
     olive
     red
 
-Additionally, you can use the `lighter-x` or `darker-x` modifiers, where x is a multiple of 10 between 10 and 90, e.g. `mint-darker-20` or `red-lighter-80`
+Additionally, you can use the `lighter-x` or `darker-x` modifiers, where x is a multiple of 10 between 10 and 90, e.g. `mint-darker-20` or `red-lighter-80`
+
+## Publications
+
+Publications are used to render a list of DataPLANT publications on the `/publications.html` page.
+
+Publications are located in the `src/content/publications` directory, and MUST adhere to the [BibTeX format](https://bibtex.eu/de/fields/).
+
+To add a new publication, either file a pull request with a bibtex file, or [create an issue](https://github.com/nfdi4plants/nfdi4plants.github.io/issues/new) with the publication details.
+
+The following bibtex fields are *mandatory* for a publication to be rendered correctly:
+
+| Field  | Description | Example |
+| --- | --- | --- |
+| `title` | The title of the publication | `title = {PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research}` |
+| `author` | The authors of the publication. Ideally, follow the scheme of `Lastname, Suffix, Firstname` joined by `and` for multiple authors | `author = {Weil, Heinrich Lukas and Schneider, Kevin` |
+| `year` | The year of publication | `year = {2023}` |
+| `doi` or `url` | The DOI or URL of the publication. If both are present, `doi` will be used. This field is used to create the link pointing to the full publication record | `doi = {https://doi.org/10.1111/tpj.16474}`; `url = {https://doi.org/10.1111/tpj.16474}` |
+
+Here is an example containing minimal information:
+
+```BibTeX
+@article{DataHUB,
+  author = {Weil, Heinrich Lukas and Schneider, Kevin and Tschöpe, Marcel and Bauer, Jonathan and Maus, Oliver and Frey, Kevin and Brilhaus, Dominik and Martins Rodrigues, Cristina and Doniparthi, Gajendra and Wetzels, Florian and Lukasczyk, Jonas and Kranz, Angela and Grüning, Björn and Zimmer, David and Deßloch, Stefan and von Suchodoletz, Dirk and Usadel, Björn and Garth, Christoph and Mühlhaus, Timo},
+  title = {PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research},
+  doi = {https://doi.org/10.1111/tpj.16474},
+  year = {2023}
+}
+```
+
+The following bibtex fields are *optional* and are used to render additional information via tags:
+
+| Field  | Description | Example |
+| --- | --- | --- |
+| `journal` | The journal in which the publication was published | `journal = {The Plant Journal}` |
+| `note` | This field is used to indicate open access, strictly via the value `open access`. | `note = {open access}` |
+
+Here is an example containing all information:
+
+```BibTeX
+@article{DataHUB,
+  author = {Weil, Heinrich Lukas and Schneider, Kevin and Tschöpe, Marcel and Bauer, Jonathan and Maus, Oliver and Frey, Kevin and Brilhaus, Dominik and Martins Rodrigues, Cristina and Doniparthi, Gajendra and Wetzels, Florian and Lukasczyk, Jonas and Kranz, Angela and Grüning, Björn and Zimmer, David and Deßloch, Stefan and von Suchodoletz, Dirk and Usadel, Björn and Garth, Christoph and Mühlhaus, Timo},
+  title = {PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research},
+  journal = {The Plant Journal},
+  doi = {https://doi.org/10.1111/tpj.16474},
+  year = {2023},
+  note = {open access}
+}
+```

src/content/publications/0.bib

@@ -0,0 +1,8 @@
+@white_paper{0,
+author = {Glöckner, Frank Oliver and Diepenbroek, Michael and Felden, Janine and Overmann, Jörg and Bonn, Aletta and Gemeinholzer, Birgit and Güntsch, Anton and König-Ries, Birgitta and Seeger, Bernhard and Pollex-Krüger, Annette and Fluck, Juliane and Pigeot, Iris and Kirsten Toralf and Mühlhaus, Timo and Wolf, Christof and Heinrich, Uwe and Steinbeck, Christoph and Koepler, Oliver and Stegle, Oliver and Weimann, Joachim and Schörner-Sadenius, Thomas and Gutt, Christian and Stahl, Florian and Wagemann, Kurt and Schrade, Torsten and Schmitt, Robert and Eberl, Chris and Gauterin, Frank and Schultz, Martin and Bernard, Lars},
+title = {Berlin Declaration on NFDI Cross-Cutting Topics (Version 1)},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.3457213},
+year = {2019},
+note = {open access}
+}

src/content/publications/1.bib

@@ -0,0 +1,8 @@
+@conference_poster{1,
+author = {Mühlhaus, Timo and Krüger, Jens and Usadel, Björn and Martins Rodrigues, Cristina and von Suchodoletz, Dirk},
+title = {DataPLANT: Driving the digital change in plant science},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.5045068},
+year = {2020},
+note = {open access}
+}

src/content/publications/10.bib

@@ -0,0 +1,8 @@
+@meeting_report{10,
+author = {Ebert, Barbara|Fluck, Juliane|Glöckner, Frank Oliver|Koepler, Oliver|Miller, Bernhard|Schmitt, Robert|Schrade, Torsten|Stegle, Oliver|Steinbeck, Christoph|von Suchodoletz, Dirk|Wagemann, Kurt|Knebes, Jennifer|Kraft, Sophie|Seitz-Moskaliuk, Hendrik|Sure-Vetter, York|Wössner, Elena},
+title = {NFDI Cross-cutting Topics Workshop Report},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.7825374},
+year = {2021},
+note = {open access}
+}

src/content/publications/11.bib

@@ -0,0 +1,8 @@
+@conference_paper{11,
+author = {Christoph Garth| Jonas Lukasczyk| Timo Mühlhaus| Benedikt Venn| Jens Krüger| Kolja Glogowski| Cristina Martins Rodrigues| Dirk von Suchodoletz},
+title = {Immutable yet evolving: ARCs for permanent sharing in the research data-time continuum},
+journal = {heiDOK, Universitätsbibiothek Heidelberg},
+doi = {https://doi.org/10.11588/heibooks.979.c13751},
+year = {2021},
+note = {open access}
+}

src/content/publications/12.bib

@@ -0,0 +1,8 @@
+@conference_paper{12,
+author = {Britta Nestler| Peter F. Pelz| Robert H. Schmitt| Marco Berger| Hauke Dierend| Benjamin Farnbacher| Bernd Flemisch| Dennis Gläser| Ina Heine| Nils Hoppe| Gerald Jagusch| Roland Lachmayer| Jan Lemmer| Jan Linxweiler| Amelie I. Metzmacher| Iryna Mozgova| Nils Preuß| Manuela Richter| Stefanie Roski| Hartmut Schlenz| Michael Selzer| Christian Stemmer},
+title = {Nationale Forschungsdateninfrastruktur für die Ingenieurwissenschaften (NFDI4Ing)},
+journal = {heiDOK, Universitätsbibiothek Heidelberg},
+doi = {https://doi.org/10.11588/heibooks.979.c13752},
+year = {2021},
+note = {open access}
+}

src/content/publications/13.bib

@@ -0,0 +1,8 @@
+@conference_paper{13,
+author = {Timo Mühlhaus| Dominik Brilhaus| Marcel Tschöpe| Oliver Maus| Björn Grüning| Christoph Garth| Cristina Martins Rodrigues| Dirk von Suchodoletz},
+title = {DataPLANT – Tools and Services to structure the Data Jungle for fundamental plant researchers},
+journal = {heiDOK, Universitätsbibiothek Heidelberg},
+doi = {https://doi.org/10.11588/heibooks.979.c13724},
+year = {2021},
+note = {open access}
+}

src/content/publications/14.bib

@@ -0,0 +1,8 @@
+@conference_paper{14,
+author = {Dirk von Suchodoletz| Timo Mühlhaus| Dominik Brilhaus| Hajira Jabeen| Björn Usadel| Jens Krüger| Holger Gauza| Cristina Martins Rodrigues},
+title = {Data Stewards as ambassadors between the NFDI and the community},
+journal = {heiDOK, Universitätsbibiothek Heidelberg},
+doi = {https://doi.org/10.11588/heibooks.979.c13750},
+year = {2021},
+note = {open access}
+}

src/content/publications/15.bib

@@ -0,0 +1,8 @@
+@conference_paper{15,
+author = {Dirk von Suchodoletz| Ulrich Hahn| Jonathan Bauer| Kolja Glogowski| Mark Seifert},
+title = {Storage for Science – Aktueller Stand und anstehende Entwicklungen eines verteilten FDM-Systems},
+journal = {heiDOK, Universitätsbibiothek Heidelberg},
+doi = {https://doi.org/10.11588/heibooks.979.c13741},
+year = {2022},
+note = {open access}
+}

src/content/publications/16.bib

@@ -0,0 +1,8 @@
+@magazine_article{16,
+author = {Jens Krüger and Timo Mühlhaus and Björn Usadel and Dirk von Suchodoletz and Cristina Martins Rodrigues},
+title = {DataPLANT - Platform for Research Data Management},
+journal = {German Network for Bioinformatics Infrastructure (de.NBI)},
+doi = {https://doi.org/10.4119/unibi/2963745},
+year = {2022},
+note = {open access}
+}

src/content/publications/17.bib

@@ -0,0 +1,8 @@
+@position_paper{17,
+author = {Konsortialversammlung des Vereins Nationale Forschungsdateninfrastruktur (NFDI) e.V.},
+title = {Stellungnahme der NFDI-Konsortien zu Basisdiensten},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.6091657},
+year = {2022},
+note = {open access}
+}

src/content/publications/18.bib

@@ -0,0 +1,8 @@
+@abstract{18,
+author = {Klaus Rechert and Dirk von Suchodoletz},
+title = {RDM and DP communities: Finding the common ground to develop a collaborative future service landscape},
+journal = { },
+doi = {https://2022.jcdl.org/wp-content/uploads/2022/04/DataPLANT-RDM-and-DP-communities-Finding-the-common-ground-to-develop-a-collaborative-future-service-landscape.pdf},
+year = {2022},
+note = {open access}
+}

src/content/publications/19.bib

@@ -0,0 +1,8 @@
+@preprint{19,
+author = {Daniel Arend| Sebastian Beier| laurent bouri| Marco Brandizi| Donald Hobern| Erwan Le Floch| Timo Mühlhaus| Cyril Pommier| Stuart Owen| Philippe Rocca-Serra| Thomas Rosnet| and Stian Soiland-Reyes},
+title = {BiohackEU22 Project 22: Plant Data Exchange and Standard Interoperability},
+journal = {BioHackrXiv},
+doi = {https://doi.org/10.37044/osf.io/c724r},
+year = {2022},
+note = {open access}
+}

src/content/publications/2.bib

@@ -0,0 +1,8 @@
+@press_release{2,
+author = {Dirk von Suchodoletz},
+title = {Pflanzliches Leben besser verstehen},
+journal = { },
+doi = {https://kommunikation.uni-freiburg.de/pm/2020/pflanzliches-leben-besser-verstehen},
+year = {2020},
+note = {open access}
+}

src/content/publications/20.bib

@@ -0,0 +1,8 @@
+@conference_paper{20,
+author = {Dirk von Suchodoletz| Jonathan Bauer| Marcel Tschöpe| Holger Gauza| Michael Derntl| Steve Kaminski},
+title = {Herausforderungen beim Aufbau eines föderierten Datenrepositories auf Basis von InvenioRDM},
+journal = {heiDOK, Universitätsbibiothek Heidelberg},
+doi = {https://doi.org/10.11588/heibooks.1288.c18069},
+year = {2023},
+note = {open access}
+}

src/content/publications/21.bib

@@ -0,0 +1,7 @@
+@conference_paper{21,
+author = {},
+title = {DataPLANT Extensible Ontology Service},
+journal = { },
+doi = {accepted for publication},
+year = {2023}
+}

src/content/publications/22.bib

@@ -0,0 +1,8 @@
+@conference_paper{22,
+author = {Leendertse, Jan| Suchodoletz, Dirk von |Semaan, Saher},
+title = {Wege aus der Verantwortungsdiffusion - Vermittelnde Angebote zwischen Top-Down und Bottom-Up},
+journal = {heiBOOKS},
+doi = {accepted for publication},
+year = {2023},
+note = {open access}
+}

src/content/publications/23.bib

@@ -0,0 +1,7 @@
+@conference_poster{23,
+author = {Brilhaus, Dominik and Kuhl, Martin and Martins Rodrigues, Cristina and Schrader, Andrea},
+title = {One Resource to Teach Them All},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.8356260},
+year = {2023}
+}

src/content/publications/24.bib

@@ -0,0 +1,8 @@
+@conference_poster{24,
+author = {Engel, Judith Sophie and Kostadinov, Ivaylo and Linares, Jimena and Frey, Kevin and von Suchodoletz, Dirk and Martins Rodrigues, Cristina},
+title = {Optimizing User Support through Synergistic Integration of Helpdesk Systems},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.8356211},
+year = {2023},
+note = {open access}
+}

src/content/publications/25.bib

@@ -0,0 +1,8 @@
+@conference_poster{25,
+author = {Rafael Gieschke and Klaus Rechert and Dirk von Suchodoletz},
+title = {Integrating Long-Term Access into DataPLANT Data Management Workflows},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.8340463},
+year = {2023},
+note = {open access}
+}

src/content/publications/26.bib

@@ -0,0 +1,8 @@
+@conference_poster{26,
+author = {Hahn, Ulrich and von Suchodoletz, Dirk and Quandt, Markus and Gloglowski, Kolja and Seifert, Mark},
+title = {bwSFS - Storage for Science: Stand und Entwicklungen eines verteilten FDM-Systems},
+journal = {heiDOK, Universitätsbibiothek Heidelberg},
+doi = {https://doi.org/10.11588/heidok.00029643},
+year = {2023},
+note = {open access}
+}

src/content/publications/27.bib

@@ -0,0 +1,8 @@
+@conference_poster{27,
+author = {Martins Rodrigues, Cristina},
+title = {Managing your Research Data with DataPLANT},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.8355914},
+year = {2023},
+note = {open access}
+}

src/content/publications/28.bib

@@ -0,0 +1,8 @@
+@conference_poster{28,
+author = {Torsten Stöter  Tobias Gottschall1 and Andrea Schrader and Peter Zentis and Monica Valencia-Schneider and Niraj Kandpal and Werner Zuschratter1 and Astrid Schauss and Timo Dickscheid and Timo Mühlhaus and Dirk von Suchodoletz},
+title = {Combining the BIDS and ARC Directory Structures for Multimodal Research Data Organization},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.8349563},
+year = {2023},
+note = {open access}
+}

src/content/publications/29.bib

@@ -0,0 +1,8 @@
+@journal_article{29,
+author = {Heinrich Lukas Weil and Kevin Schneider and Marcel Tschöpe and Jonathan Bauer and Oliver Maus and Kevin Frey and Dominik Brilhaus and Cristina Martins Rodrigues and Gajendra Doniparthi and Florian Wetzels and Jonas Lukasczyk and Angela Kranz and Björn Grüning and David Zimmer and Stefan Deßloch and Dirk von Suchodoletz and Björn Usadel and Christoph Garth and Timo Mühlhaus},
+title = {PLANTdataHUB: A collaborative platform for continuous FAIR data sharing in plant research},
+journal = {the plant journal, Wiley},
+doi = {https://doi.org/10.1111/tpj.16474},
+year = {2023},
+note = {open access}
+}

src/content/publications/3.bib

@@ -0,0 +1,8 @@
+@press_release{3,
+author = {Dirk von Suchodoletz and Usadel, Björn and Mühlhaus, Timo and Krüger, Jens},
+title = {DataPLANT: Data in Plant research [Press Release]},
+journal = { },
+doi = {https://www.dfg.de/download/pdf/foerderung/programme/nfdi/nfdi_konferenz_2020/dataplant_abstract.pdf},
+year = {2020},
+note = {open access}
+}

src/content/publications/30.bib

@@ -0,0 +1,8 @@
+@journal_article{30,
+author = {Dirk von Suchdoletz and Peter Brettschneider and Alexandra Axtmann and Maximilian Heber and Lars Oberländer and Jan Leendertse and Irene Schumm and Olaf Brandt and Karsten Schmidt and Livia Gertis and Michael Selzer and Robert Ulrich and Dorothea Iglezakis and Valerie Boda},
+title = {Sicherstellung der Reproduzierbarkeit von Forschungsergebnissen durch Bewahrung des Zugriffs auf Forschungssoftware},
+journal = {Bausteine Forschungsdatenmanagement},
+doi = {https://doi.org/10.17192/bfdm.2023.5.8555},
+year = {2023},
+note = {open access}
+}

src/content/publications/31.bib

@@ -0,0 +1,8 @@
+@white_paper{31,
+author = {Lisa Amelung and Verena Anthofer and Renita Danabalan and Évariste Demandt and Barbara Ebert and Elisabeth Elschner and Sara  Espinoza and Jan  Eufinger and Stefanie  Fuchsloch and Barbara  Götz and Christin  Henzen and Jo-hannes Hunold and Theresa Idda and Lukas Jansen and Ulrich Krieger and Cristina M. Rodrigues and Maria Meister and Bernhard Miller and Sarah Pittroff and Christian Popp and Aleksandra Pushkina and Nicole Schatlowski and Sonja Schimmler and Christiane Schneide and Thomas Schörner and Thorsten Schwetje and Jörg  Seegert and Thorsten Trippel and Judith Weber and Elena Wössner and Wolf Zinke},
+title = {White Paper: Interim Report Reference},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.7688729},
+year = {2023},
+note = {open access}
+}

src/content/publications/32.bib

@@ -0,0 +1,8 @@
+@white_paper{32,
+author = {Lisa Amelung and Eva Bodenschatz and Renita Danabalan and Évariste Demandt and Ralf Depping and Franziska Eberl and Barbara Ebert and Sara Espinoza and Stefanie Fuchsloch and Michael Goedicke and Barbara Götz and Cor-dula Hege and Christine Hennig and Christin Henzen and Johannes Hunold and Lukas Jansen and Ulrich Krieger and Cristina Martins Rodrigues and Bernhard Miller and Daniel Nüst and Nicole Schatlowski and Alina Schleuß and Christiane Schneide and Annett Schwarz and Thorsten Schwetje and Jörg Seegert and Thorsten Trippel and Elena Wössner and Wolf Zinke},
+title = {White Paper: Umgang mit Zielen der BLV als Grundlage für die Strukturevaluation},
+journal = {Zenodo},
+doi = {https://doi.org/10.5281/zenodo.8192533},
+year = {2023},
+note = {open access}
+}

src/content/publications/33.bib

@@ -0,0 +1,7 @@
+@abstract{33,
+author = {Dirk von Suchodoletz and Jonathan Bauer and Marcel Tschöpe},
+title = {DataPLANT Cloud Oriented Service Infrastructure},
+journal = {TIB Open Publishing},
+doi = {https://doi.org/10.52825/CoRDI.v1i.414},
+year = {2023}
+}

src/content/publications/34.bib

@@ -0,0 +1,7 @@
+@abstract{34,
+author = {Dirk von Suchodoletz and Yi Sun and Jean-Karim Hériché and Manuel Messner},
+title = {Improving the Research Desktop Experience for OpenStack VDI},
+journal = {TIB Open Publishing},
+doi = {https://doi.org/10.52825/cordi.v1i.413},
+year = {2023}
+}

src/content/publications/35.bib

@@ -0,0 +1,8 @@
+@preprint{35,
+author = {Daniel Arend and Sebastian Beier and Dominik Brilhaus and Hannah Dörpholz and Manuel Feser and Kevin Frey and Patrick König and Oliver Maus and DennisPsaroudakis and Cristina Martins Rodrigues and Andrea Schrader and ElisaSenger and Heinrich Lukas Weil},
+title = {Improving Metadata Collection and Aggregation in Plant Phenotyping Experiments with MIAPPE Wizard and DataPLANT},
+journal = {BioHackrXiv},
+doi = {https://doi.org/10.37044/osf.io/ekhdw},
+year = {2023},
+note = {open access}
+}