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Merge pull request #264 from nfdi4plants/mibinet-workshop
Mibinet workshop
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323 changes: 155 additions & 168 deletions
323
...ing-materials/disseminations/2023-09-MibiNet-CEPLAS-StartYourARC/Block05-MetadataISA.html
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| Original file line number | Diff line number | Diff line change |
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@@ -11,8 +11,6 @@ author: | |
| - name: Martin Kuhl | ||
| github: https://github.com/Martin-Kuhl | ||
| orcid: https://orcid.org/0000-0002-8493-1077 | ||
| - name: Sabrina Zander | ||
| orcid: https://orcid.org/0009-0000-4569-6126 | ||
| --- | ||
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| # Block 5 – Metadata and ISA | ||
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@@ -48,10 +46,6 @@ September 28th, 2023 | |
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| --- | ||
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| # Metadata | ||
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| --- | ||
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| # What is <br> **metadata**? | ||
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| <style scoped> | ||
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@@ -252,7 +246,7 @@ ul { | |
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| # Metadata "Standards" | ||
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| Examples from Minimum Information for Biological and Biomedical Investigations (MIBBI): | ||
| Examples from [Minimum Information for Biological and Biomedical Investigations (MIBBI)](https://fairsharing.org/3518): | ||
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| - MIAPPE | Minimum Information About a Plant Phenotyping Experiment <https://www.miappe.org> | ||
| - MIAME | Minimum Information About a Microarray Experiment <https://www.fged.org/projects/miame/> | ||
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@@ -323,37 +317,29 @@ code { | |
| <https://schema.org/Person> | ||
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| ```json | ||
| <script type="application/ld+json"> | ||
| { | ||
| "@context": "https://schema.org", | ||
| "@type": "VisualArtwork", | ||
| "name": "La trahison des images", | ||
| "alternateName": "The Treachery of Images", | ||
| "image": "http://upload.wikimedia.org/wikipedia/en/b/b9/MagrittePipe.jpg", | ||
| "description": "The painting shows a pipe. Below it, Magritte...", | ||
| "creator": [ | ||
| { | ||
| "@type": "Person", | ||
| "name": "René Magritte", | ||
| "sameAs": "https://www.freebase.com/m/06h88" | ||
| } | ||
| ], | ||
| "width": [ | ||
| { | ||
| "@type": "Distance", | ||
| "name": "940 mm" | ||
| } | ||
| ], | ||
| "height": [ | ||
| { | ||
| "@type": "Distance", | ||
| "name": "635 mm" | ||
| } | ||
| ], | ||
| "artMedium": "oil", | ||
| "artworkSurface": "canvas" | ||
| } | ||
| </script> | ||
| <script type="application/ld+json"> | ||
| { | ||
| "@context": "https://schema.org", | ||
| "@type": "Person", | ||
| "address": { | ||
| "@type": "PostalAddress", | ||
| "addressLocality": "Seattle", | ||
| "addressRegion": "WA", | ||
| "postalCode": "98052", | ||
| "streetAddress": "20341 Whitworth Institute 405 N. Whitworth" | ||
| }, | ||
| "colleague": [ | ||
| "http://www.xyz.edu/students/alicejones.html", | ||
| "http://www.xyz.edu/students/bobsmith.html" | ||
| ], | ||
| "email": "mailto:[email protected]", | ||
| "image": "janedoe.jpg", | ||
| "jobTitle": "Professor", | ||
| "name": "Jane Doe", | ||
| "telephone": "(425) 123-4567", | ||
| "url": "http://www.janedoe.com" | ||
| } | ||
| </script> | ||
| ``` | ||
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| --- | ||
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@@ -584,7 +570,7 @@ TODO: | |
| # The Pizza Ontology | ||
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| - Example from protege: <https://protege.stanford.edu/ontologies/pizza/pizza.owl> | ||
| - Visualize viw WebVOWL <http://vowl.visualdataweb.org/webvowl.html> | ||
| - Visualize via WebVOWL <http://vowl.visualdataweb.org/webvowl.html> | ||
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| --- | ||
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@@ -782,7 +768,7 @@ section { | |
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| # Realization of lab-specific metadata templates | ||
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|  | ||
|  | ||
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| Facilities can define their most common workflows as templates | ||
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@@ -818,6 +804,4 @@ Slides presented here include contributions by | |
| - name: Martin Kuhl | ||
| github: https://github.com/Martin-Kuhl | ||
| orcid: https://orcid.org/0000-0002-8493-1077 | ||
| - name: Sabrina Zander | ||
| orcid: https://orcid.org/0009-0000-4569-6126 | ||
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122 changes: 61 additions & 61 deletions
122
...g-materials/disseminations/2023-09-MibiNet-CEPLAS-StartYourARC/Block06-Swate-HandsOn.html
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22 changes: 12 additions & 10 deletions
22
...s/CEPLAS-StartYourARC-Series/2023-06-14_CEPLAS-Session03/2023-06-14_CEPLAS-Session03.html
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