Merge pull request #269 from nfdi4plants/cscs-workshop

Cscs workshop

src/docs/teaching-materials/disseminations/2023-10-CSCS-CEPLAS-StartYourARC/Block01a-WelcomeIntro.md

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+---
+marp: true
+theme: marp-theme_dataplant-ceplas-ccby
+paginate: true
+license: '[CC-BY 4.0](https://creativecommons.org/licenses/by/4.0/)'
+title: Welcome and Intro
+author:
+- name: Dominik Brilhaus
+  github: https://github.com/brilator
+  orcid: https://orcid.org/0000-0001-9021-3197
+---
+
+# Block 1 – Welcome and Intro
+
+<style scoped>section {background: none; background-color: white}</style>
+<!-- _paginate: false -->
+
+October 5th, 2023
+
+Dominik Brilhaus, [CEPLAS Data Science](https://www.ceplas.eu/en/research/data-science-and-data-management/)
+
+---
+
+# Welcome
+
+Please introduce yourselves
+
+- Who are you?
+- Where are you?
+- What was your **motivation** to join this workshop?
+- Summarize your **study design**
+- Name your **favorite assay** or measurement technique
+
+---
+
+# House-keeping
+
+--- 
+
+
+
+## This workshop session will be recorded
+
+I will cut out all participant chat, video, audio, etc. or ask for permission before sharing any recordings
+
+---
+## This is an interactive workshop
+
+Please feel free to use the chat, raise hands, discuss, etc.
+
+<br>
+
+![Alt text](custom/webex-features.png)
+
+<br>
+
+:bulb: Let's try to collect questions and answers in the Q&A panel =>
+
+![bg right:25% w:330](custom/webex-QA.png)
+
+---
+
+# Goal
+
+Create ARCs to share research data
+
+<br>
+
+:bulb: In this workshop we focus more on **how** and less on **why**
+
+---
+
+# Tentative agenda
+
+Time | Topics
+-------- | --------
+13:00 - 14:00 | Welcome and intro
+14:00 - 14:15 | *Short break*
+14:15 - 16:00 | ARC and ARCitect Hands-on
+16:00 - 16:15 | *Short break*
+16:15 - 17:00 | Q & A
+
+:bulb: Please try to prepare your own ARC until the next session

src/docs/teaching-materials/disseminations/2023-10-CSCS-CEPLAS-StartYourARC/Block02-DataPLANT-ARC.md

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+---
+marp: true
+theme: marp-theme_dataplant-ceplas-ccby
+paginate: true
+license: '[CC-BY 4.0](https://creativecommons.org/licenses/by/4.0/)'
+title: Intro to DataPLANT and ARC
+author:
+- name: Dominik Brilhaus
+  github: https://github.com/brilator
+  orcid: https://orcid.org/0000-0001-9021-3197
+- name: Cristina Martins Rodrigues
+  github: https://github.com/CMR248
+  orcid: https://orcid.org/0000-0002-4849-1537
+- name: Martin Kuhl
+  github: https://github.com/Martin-Kuhl
+  orcid: https://orcid.org/0000-0002-8493-1077
+---
+
+# Block 2 – Intro to DataPLANT and ARC
+
+October 5th, 2023
+
+Dominik Brilhaus, [CEPLAS Data Science](https://www.ceplas.eu/en/research/data-science-and-data-management/)
+
+---
+
+# DataPLANT &ndash; <br>The NFDI4Plants
+
+![bg right:50% width:500px](./../../../img/DataPLANT_TaskAreas.svg)
+
+- NFDI: "Nationale Forschungsdaten Infrastruktur" &ndash; [www.nfdi.de](https://www.nfdi.de/)
+- Funded since end of 2020
+
+---
+
+# Data Stewardship between DataPLANT and the community  <!-- fit -->
+
+![w:880](./custom/DataPLANT-collaboration-cscs.drawio.png)
+
+---
+
+# Annotated Research Context (ARC)
+
+![width:950](./../../../img/ARC_DataCentricIntegration_img1.png)
+
+---
+
+![left h:640](./../../../img/User_Challenges_002.svg)
+
+---
+
+![bg cover](./../../../img/DataPLANT_BigPicture_seq1.png)
+
+---
+
+![bg cover](./../../../img/DataPLANT_BigPicture_seq2.png)
+
+---
+
+![bg cover](./../../../img/DataPLANT_BigPicture_seq3.png)
+
+---
+
+![bg cover](./../../../img/DataPLANT_BigPicture_seq4.png)
+
+---
+
+![bg cover](./../../../img/DataPLANT_BigPicture_seq5.png)
+
+---
+
+![bg cover](./../../../img/DataPLANT_BigPicture_seq6.png)
+
+---
+
+![bg cover](./../../../img/DataPLANT_BigPicture_seq7.png)
+
+---
+
+![bg cover](./../../../img/DataPLANT_BigPicture_seq8.png)
+
+---
+
+# What does an ARC look like?
+
+![width:950](./../../../img/ARC_fillWithData_seq1.png)
+
+---
+
+# What does an ARC look like?
+
+![width:950](./../../../img/ARC_fillWithData_seq2.png)
+
+---
+
+# What does an ARC look like?
+
+![width:950](./../../../img/ARC_fillWithData_seq3.png)
+
+---
+
+# What does an ARC look like?
+
+![width:950](./../../../img/ARC_fillWithData_seq4.png)
+
+---
+
+# What does an ARC look like?
+
+![width:950](./../../../img/ARC_fillWithData_seq5.png)
+
+---
+
+# What does an ARC look like?
+
+![width:950](./../../../img/ARC_fillWithData_seq6.png)
+
+---
+
+
+---
+
+# Contributors
+
+Slides presented here include contributions by
+
+- name: Dominik Brilhaus
+  github: https://github.com/brilator
+  orcid: https://orcid.org/0000-0001-9021-3197
+- name: Cristina Martins Rodrigues
+  github: https://github.com/CMR248
+  orcid: https://orcid.org/0000-0002-4849-1537
+- name: Martin Kuhl
+  github: https://github.com/Martin-Kuhl
+  orcid: https://orcid.org/0000-0002-8493-1077
+