Merge pull request #531 from nfdi4plants/restructure

Restructure
nfdi4plants · Nov 26, 2024 · a8ff7bc · a8ff7bc
2 parents a13ab1e + 8ed5741
commit a8ff7bc
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diff --git a/src/content/docs/core-concepts/arc.mdx b/src/content/docs/core-concepts/arc.mdx
@@ -3,6 +3,8 @@ title: ARC
 lastUpdated: 2023-05-25
 authors:
   - martin-kuhl
+sidebar:
+  order: 1
 ---
 
 # Annotated Research Context (ARC)

diff --git a/...des/best-practices-for-data-annotation.md → ...pts/best-practices-for-data-annotation.md b/...des/best-practices-for-data-annotation.md → ...pts/best-practices-for-data-annotation.md
@@ -3,6 +3,8 @@ title: Best Practices For Data Annotation
 lastUpdated: 2022-11-07
 authors:
   - martin-kuhl
+sidebar:
+  order: 3
 ---
 
 

diff --git a/...ntent/docs/guides/arc-practical-entry.mdx → ...s/core-concepts/is-my-arc-good-enough.mdx b/...ntent/docs/guides/arc-practical-entry.mdx → ...s/core-concepts/is-my-arc-good-enough.mdx
@@ -1,5 +1,5 @@
 ---
-title: Creating an ARC for Your Project
+title: Is My ARC Good Enough?
 lastUpdated: 2024-11-13
 authors:
  - dominik-brilhaus

diff --git a/src/content/docs/core-concepts/isa.md b/src/content/docs/core-concepts/isa.md
@@ -4,6 +4,8 @@ authors:
   - dominik-brilhaus
   - martin-kuhl
 lastUpdated: 2024-11-06
+sidebar:
+  order: 6
 ---
 
 The ARC builds on the <a href="https://isa-specs.readthedocs.io/en/latest/isamodel.html" target="_blank">ISA model</a> (Investigation - Study - Assay) for metadata annotation, which aligns well with most projects in biology labs. It allows to group multiple studies and assays to one investigation.

diff --git a/...ent/docs/guides/arc-enabling-platforms.md → ...re-concepts/optimizing-arc-integration.md b/...ent/docs/guides/arc-enabling-platforms.md → ...re-concepts/optimizing-arc-integration.md
@@ -1,8 +1,10 @@
 ---
-title: ARCs in Enabling Platforms
+title: Optimizing ARC Integration
 lastUpdated: 2023-08-04
 authors:
   - dominik-brilhaus
+sidebar:
+  order: 4
 ---
 
 Here we explore how the ARC can help streamline data flows and project management in enabling platforms.

diff --git a/src/content/docs/cwl/index.mdx b/src/content/docs/cwl/index.mdx
@@ -36,4 +36,9 @@ Please explore the sections on the left to find guides on
     href="/nfdi4plants.knowledgebase/cwl/cwl-examples"
     description="Find some example files!"
   />
+  <LinkCard
+    title="Step by Step"
+    href="/nfdi4plants.knowledgebase/cwl/step-by-step"
+    description="Join us for a step by step example of how to wrap a python script."
+  />
 </CardGrid>
diff --git a/...ntent/docs/guides/arc-cwl-wrap-script.mdx → src/content/docs/cwl/step-by-step.mdx b/...ntent/docs/guides/arc-cwl-wrap-script.mdx → src/content/docs/cwl/step-by-step.mdx
@@ -1,5 +1,5 @@
 ---
-title: Wrapping a script with CWL
+title: Step by Step
 lastUpdated: 2024-11-14
 authors:
   - dominik-brilhaus

diff --git a/src/content/docs/guides/annotate-in-excel.mdx b/src/content/docs/guides/annotate-in-excel.mdx
@@ -7,7 +7,7 @@ sidebar:
   order: 1
   badge:
     text: new
-    variant: caution
+    variant: tip
 ---
 
 import { Steps } from '@astrojs/starlight/components';

diff --git a/src/content/docs/guides/publish-arc.mdx b/src/content/docs/guides/publish-arc.mdx
@@ -14,10 +14,18 @@ import ViolaSays from '@components/ViolaSays.astro'
 import { Steps } from '@astrojs/starlight/components';
 import { Card } from '@astrojs/starlight/components';
 
+
+Find out more about ARC data publications [here](/nfdi4plants.knowledgebase/datahub/data-publications)!
+
+## Prequisites
+
+Before you can publish your ARC to DataPLANT's publication service (based on Invenio), it needs to be validated.
+
 :::note
-Before you can publish your ARC to DataPLANT's publication service (based on Invenio), it needs to be validated. Follow [this guide](/nfdi4plants.knowledgebase/guides/validate-arc) to validate your ARC for Invenio. 
+Follow [this guide](/nfdi4plants.knowledgebase/guides/validate-arc) to validate your ARC for Invenio. 
 :::
 
+# PLANTDataHUB
 
 <Card icon="gitlab" title="PLANTDataHUB">
     <Steps>
@@ -40,7 +48,3 @@ Before you can publish your ARC to DataPLANT's publication service (based on Inv
 
     </Steps>
 </Card>
-
-:::tip
-Find out more about ARC data publications [here](/nfdi4plants.knowledgebase/datahub/data-publications)
-:::