FIX: MCRIBS auto surface reconstruction logic #830

	name: Pytest

	on:
	push:
	branches: [ '*' ]
	tags: [ '*' ]
	pull_request:
	branches: [ master, 'maint/*' ]

	defaults:
	run:
	shell: bash

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	permissions:
	contents: read

	jobs:
	build:
	if: "!contains(github.event.head_commit.message, '[skip ci]')"
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ['3.10', '3.11']

	steps:
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- uses: actions/checkout@v4
	with:
	fetch-depth: 0
	- name: Install nibabies
	run: \|
	python -m venv /tmp/venv
	source /tmp/venv/bin/activate
	python -m pip install -U pip
	python -m pip install ".[test]"
	- name: Run Pytest
	run: \|
	source /tmp/venv/bin/activate
	pytest -sv --doctest-modules --cov nibabies --cov-report xml nibabies
	- name: Submit coverage
	uses: codecov/codecov-action@v3
	with:
	files: coverage.xml

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