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CI: Simplify circle config by reusing blocks (#209)
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,16 +1,52 @@ | ||
| _machine_defaults: &machine_defaults | ||
| environment: | ||
| TZ: "/usr/share/zoneinfo/America/New_York" | ||
| SCRATCH: "/scratch" | ||
| machine: | ||
| image: ubuntu-2004:current | ||
| docker_layer_caching: true | ||
| working_directory: /tmp/src/nibabies | ||
|
|
||
| _python_defaults: &python_defaults | ||
| docker: | ||
| - image: circleci/python:3.9.6 | ||
| working_directory: /tmp/src/nibabies | ||
|
|
||
|
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||
| _docker_auth: &docker_auth | ||
| name: Docker authentication | ||
| command: | | ||
| if [[ -n $DOCKER_PAT ]]; then | ||
| echo "$DOCKER_PAT" | docker login -u $DOCKER_USER --password-stdin | ||
| fi | ||
| _setup_docker_registry: &setup_docker_registry | ||
| name: Set up Docker registry | ||
| command: | | ||
| if [[ -f /tmp/images/registry.tar.gz ]]; then | ||
| echo "Loading saved registry image" | ||
| docker load < /tmp/images/registry.tar.gz | ||
| else | ||
| echo "Pulling registry image from DockerHub" | ||
| docker pull registry:2 | ||
| fi | ||
| docker run -d -p 5000:5000 --restart=always --name=registry \ | ||
| -v /tmp/docker:/var/lib/registry registry:2 | ||
| _pull_from_registry: &pull_from_registry | ||
| name: Pull and tag image from local registry | ||
| command: | | ||
| docker pull localhost:5000/nibabies | ||
| docker tag localhost:5000/nibabies nipreps/nibabies:latest | ||
| version: 2.1 | ||
| orbs: | ||
| docker: circleci/[email protected] | ||
|
|
||
| jobs: | ||
|
|
||
| build: | ||
| environment: | ||
| TZ: "/usr/share/zoneinfo/America/New_York" | ||
| SCRATCH: "/scratch" | ||
| machine: | ||
| image: ubuntu-2004:202107-02 | ||
| working_directory: /tmp/src/nibabies | ||
| <<: *machine_defaults | ||
| steps: | ||
| - checkout | ||
| - run: | ||
|
|
@@ -31,26 +67,15 @@ jobs: | |
| - /tmp/docker | ||
| - /tmp/images | ||
| - docker/install-docker-credential-helper | ||
| - run: *docker_auth | ||
| - run: *setup_docker_registry | ||
| - run: | ||
| name: Docker authentication | ||
| name: Save Docker registry | ||
| command: | | ||
| if [[ -n $DOCKER_PAT ]]; then | ||
| echo "$DOCKER_PAT" | docker login -u $DOCKER_USER --password-stdin | ||
| fi | ||
| - run: | ||
| name: Set up Docker registry | ||
| command: | | ||
| if [[ -f /tmp/images/registry.tar.gz ]]; then | ||
| echo "Loading saved registry image" | ||
| docker load < /tmp/images/registry.tar.gz | ||
| else | ||
| echo "Pulling registry image from DockerHub" | ||
| docker pull registry:2 | ||
| if [[ ! -f /tmp/images/registry.tar.gz ]]; then | ||
| mkdir -p /tmp/images | ||
| docker save registry:2 | gzip > /tmp/images/registry.tar.gz | ||
| fi | ||
| docker run -d -p 5000:5000 --restart=always --name=registry \ | ||
| -v /tmp/docker:/var/lib/registry registry:2 | ||
| - run: | ||
| name: Pull images | ||
| command: | | ||
|
|
@@ -188,9 +213,7 @@ jobs: | |
| - bcp/nipype.cfg | ||
|
|
||
| test_pytest: | ||
| machine: | ||
| image: ubuntu-2004:202107-02 | ||
| working_directory: /tmp/src/nibabies | ||
| <<: *machine_defaults | ||
| steps: | ||
| - checkout: | ||
| path: /home/circleci/src/nibabies | ||
|
|
@@ -218,29 +241,9 @@ jobs: | |
| keys: | ||
| - data-v3-{{ .Branch }}-{{ .Revision }} | ||
| - docker/install-docker-credential-helper | ||
| - run: | ||
| name: Docker authentication | ||
| command: | | ||
| if [[ -n $DOCKER_PAT ]]; then | ||
| echo "$DOCKER_PAT" | docker login -u $DOCKER_USER --password-stdin | ||
| fi | ||
| - run: | ||
| name: Set-up a Docker registry | ||
| command: | | ||
| if [[ -f /tmp/images/registry.tar.gz ]]; then | ||
| echo "Loading saved registry image" | ||
| docker load < /tmp/images/registry.tar.gz | ||
| else | ||
| echo "Pulling registry image from DockerHub" | ||
| docker pull registry:2 | ||
| fi | ||
| docker run -d -p 5000:5000 --restart=always --name=registry \ | ||
| -v /tmp/docker:/var/lib/registry registry:2 | ||
| - run: | ||
| name: Pull images from local registry | ||
| command: | | ||
| docker pull localhost:5000/nibabies | ||
| docker tag localhost:5000/nibabies nipreps/nibabies:latest | ||
| - run: *docker_auth | ||
| - run: *setup_docker_registry | ||
| - run: *pull_from_registry | ||
| - run: | ||
| name: Run nibabies tests | ||
| no_output_timeout: 2h | ||
|
|
@@ -279,12 +282,10 @@ jobs: | |
| path: /tmp/data/reports | ||
|
|
||
| test_bcp: | ||
| machine: | ||
| image: ubuntu-2004:202107-02 | ||
| working_directory: /tmp/bcp | ||
| environment: | ||
| - FS_LICENSE: /tmp/fslicense/license.txt | ||
| - DATASET: bcp | ||
| <<: *machine_defaults | ||
| steps: | ||
| - checkout: | ||
| path: /home/circleci/src/nibabies | ||
|
|
@@ -323,29 +324,9 @@ jobs: | |
| - bcp-anat-v0-master- | ||
| - bcp-anat-v0- | ||
| - docker/install-docker-credential-helper | ||
| - run: | ||
| name: Docker authentication | ||
| command: | | ||
| if [[ -n $DOCKER_PAT ]]; then | ||
| echo "$DOCKER_PAT" | docker login -u $DOCKER_USER --password-stdin | ||
| fi | ||
| - run: | ||
| name: Set-up a Docker registry | ||
| command: | | ||
| if [[ -f /tmp/images/registry.tar.gz ]]; then | ||
| echo "Loading saved registry image" | ||
| docker load < /tmp/images/registry.tar.gz | ||
| else | ||
| echo "Pulling registry image from DockerHub" | ||
| docker pull registry:2 | ||
| fi | ||
| docker run -d -p 5000:5000 --restart=always --name=registry \ | ||
| -v /tmp/docker:/var/lib/registry registry:2 | ||
| - run: | ||
| name: Pull images from local registry | ||
| command: | | ||
| docker pull localhost:5000/nibabies | ||
| docker tag localhost:5000/nibabies nipreps/nibabies:latest | ||
| - run: *docker_auth | ||
| - run: *setup_docker_registry | ||
| - run: *pull_from_registry | ||
| - run: | ||
| name: Setting up test | ||
| command: | | ||
|
|
@@ -412,11 +393,8 @@ jobs: | |
| path: /tmp/bcp/derivatives | ||
|
|
||
| deploy_docker_patches: | ||
| machine: | ||
| image: ubuntu-2004:202107-02 | ||
| working_directory: /tmp/src/nibabies | ||
| <<: *machine_defaults | ||
| steps: | ||
|
|
||
| - run: | ||
| name: Check whether image should be deployed to Docker Hub | ||
| command: | | ||
|
|
@@ -441,29 +419,9 @@ jobs: | |
| - /tmp/docker | ||
| - /tmp/images | ||
| - docker/install-docker-credential-helper | ||
| - run: | ||
| name: Docker authentication | ||
| command: | | ||
| if [[ -n $DOCKER_PAT ]]; then | ||
| echo "$DOCKER_PAT" | docker login -u $DOCKER_USER --password-stdin | ||
| fi | ||
| - run: | ||
| name: Setup a Docker registry | ||
| command: | | ||
| if [[ -f /tmp/images/registry.tar.gz ]]; then | ||
| echo "Loading saved registry image" | ||
| docker load < /tmp/images/registry.tar.gz | ||
| else | ||
| echo "Pulling registry image from DockerHub" | ||
| docker pull registry:2 | ||
| fi | ||
| docker run -d -p 5000:5000 --restart=always --name=registry \ | ||
| -v /tmp/docker:/var/lib/registry registry:2 | ||
| - run: | ||
| name: Pull images from local registry | ||
| command: | | ||
| docker pull localhost:5000/nibabies | ||
| docker tag localhost:5000/nibabies nipreps/nibabies:latest | ||
| - run: *docker_auth | ||
| - run: *setup_docker_registry | ||
| - run: *pull_from_registry | ||
| - run: | ||
| name: Deploy to Docker Hub | ||
| no_output_timeout: 40m | ||
|
|
@@ -472,9 +430,7 @@ jobs: | |
| docker push nipreps/nibabies:${CIRCLE_BRANCH#docker/} | ||
| deploy_docker: | ||
| machine: | ||
| image: ubuntu-2004:202107-02 | ||
| working_directory: /tmp/src/nibabies | ||
| <<: *machine_defaults | ||
| steps: | ||
| - checkout: | ||
| path: /home/circleci/src/nibabies | ||
|
|
@@ -493,29 +449,9 @@ jobs: | |
| - /tmp/docker | ||
| - /tmp/images | ||
| - docker/install-docker-credential-helper | ||
| - run: | ||
| name: Docker authentication | ||
| command: | | ||
| if [[ -n $DOCKER_PAT ]]; then | ||
| echo "$DOCKER_PAT" | docker login -u $DOCKER_USER --password-stdin | ||
| fi | ||
| - run: | ||
| name: Set-up a Docker registry | ||
| command: | | ||
| if [[ -f /tmp/images/registry.tar.gz ]]; then | ||
| echo "Loading saved registry image" | ||
| docker load < /tmp/images/registry.tar.gz | ||
| else | ||
| echo "Pulling registry image from DockerHub" | ||
| docker pull registry:2 | ||
| fi | ||
| docker run -d -p 5000:5000 --restart=always --name=registry \ | ||
| -v /tmp/docker:/var/lib/registry registry:2 | ||
| - run: | ||
| name: Pull images from local registry | ||
| command: | | ||
| docker pull localhost:5000/nibabies | ||
| docker tag localhost:5000/nibabies nipreps/nibabies:latest | ||
| - run: *docker_auth | ||
| - run: *setup_docker_registry | ||
| - run: *pull_from_registry | ||
| - run: | ||
| name: Deploy to Docker Hub | ||
| no_output_timeout: 40m | ||
|
|
@@ -532,9 +468,7 @@ jobs: | |
| fi | ||
| test_deploy_pypi: | ||
| docker: | ||
| - image: circleci/python:3.9.6 | ||
| working_directory: /tmp/src/nibabies | ||
| <<: *python_defaults | ||
| steps: | ||
| - checkout | ||
| - run: | ||
|
|
@@ -603,9 +537,7 @@ jobs: | |
| path: /tmp/src/nibabies/wrapper/dist | ||
|
|
||
| deploy_pypi: | ||
| docker: | ||
| - image: circleci/python:3.9.6 | ||
| working_directory: /tmp/src/nibabies | ||
| <<: *python_defaults | ||
| steps: | ||
| - checkout | ||
| - run: | ||
|
|
||