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# Sphinx build info version 1
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config: b46e14fdff70f7c2c891160d2bd10dac
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config: b46e14fdff70f7c2c891160d2bd10dac
tags: 645f666f9bcd5a90fca523b33c5a78b7
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# Sphinx build info version 1
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config: b46e14fdff70f7c2c891160d2bd10dac
config: 76cfa122f63bfdd0ba2fc146e2c3f04c
tags: 645f666f9bcd5a90fca523b33c5a78b7
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config: b46e14fdff70f7c2c891160d2bd10dac
tags: 645f666f9bcd5a90fca523b33c5a78b7
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &mdash; smriprep 0.16.2.dev5 documentation</title>
<title>Overview: module code &mdash; smriprep 0.16.2.dev24 documentation</title>
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</dl>
<dl>
<dt>Branches</dt>
<dd><a href="../../dependabot_github_actions_codecov_codecov-action-5/index.html">dependabot/github_actions/codecov/codecov-action-5</a></dd>
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>smriprep.cli.run &mdash; smriprep 0.16.2.dev5 documentation</title>
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</dl>
<dl>
<dt>Branches</dt>
<dd><a href="../../../../dependabot_github_actions_codecov_codecov-action-5/index.html">dependabot/github_actions/codecov/codecov-action-5</a></dd>
<dd><a href="../../../../enh_calabel/index.html">enh/calabel</a></dd>
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>smriprep.interfaces &mdash; smriprep 0.16.2.dev5 documentation</title>
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</dl>
<dl>
<dt>Branches</dt>
<dd><a href="../../../dependabot_github_actions_codecov_codecov-action-5/index.html">dependabot/github_actions/codecov/codecov-action-5</a></dd>
<dd><a href="../../../enh_calabel/index.html">enh/calabel</a></dd>
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>smriprep.interfaces.freesurfer &mdash; smriprep 0.16.2.dev5 documentation</title>
<title>smriprep.interfaces.freesurfer &mdash; smriprep 0.16.2.dev24 documentation</title>
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</dl>
<dl>
<dt>Branches</dt>
<dd><a href="../../../../dependabot_github_actions_codecov_codecov-action-5/index.html">dependabot/github_actions/codecov/codecov-action-5</a></dd>
<dd><a href="../../../../enh_calabel/index.html">enh/calabel</a></dd>
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>smriprep.interfaces.reports &mdash; smriprep 0.16.2.dev5 documentation</title>
<title>smriprep.interfaces.reports &mdash; smriprep 0.16.2.dev24 documentation</title>
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</dl>
<dl>
<dt>Branches</dt>
<dd><a href="../../../../dependabot_github_actions_codecov_codecov-action-5/index.html">dependabot/github_actions/codecov/codecov-action-5</a></dd>
<dd><a href="../../../../enh_calabel/index.html">enh/calabel</a></dd>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>smriprep.interfaces.surf &mdash; smriprep 0.16.2.dev5 documentation</title>
<title>smriprep.interfaces.surf &mdash; smriprep 0.16.2.dev24 documentation</title>
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</dl>
<dl>
<dt>Branches</dt>
<dd><a href="../../../../dependabot_github_actions_codecov_codecov-action-5/index.html">dependabot/github_actions/codecov/codecov-action-5</a></dd>
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>smriprep.interfaces.templateflow &mdash; smriprep 0.16.2.dev5 documentation</title>
<title>smriprep.interfaces.templateflow &mdash; smriprep 0.16.2.dev24 documentation</title>
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Expand Down Expand Up @@ -128,8 +128,11 @@ <h1>Source code for smriprep.interfaces.templateflow</h1><div class="highlight">
<span class="n">atlas</span> <span class="o">=</span> <span class="n">InputMultiObject</span><span class="p">(</span><span class="n">traits</span><span class="o">.</span><span class="n">Str</span><span class="p">,</span> <span class="n">desc</span><span class="o">=</span><span class="s1">&#39;Specify an atlas&#39;</span><span class="p">)</span>
<span class="n">cohort</span> <span class="o">=</span> <span class="n">InputMultiObject</span><span class="p">(</span><span class="n">traits</span><span class="o">.</span><span class="n">Either</span><span class="p">(</span><span class="n">traits</span><span class="o">.</span><span class="n">Str</span><span class="p">,</span> <span class="n">traits</span><span class="o">.</span><span class="n">Int</span><span class="p">),</span> <span class="n">desc</span><span class="o">=</span><span class="s1">&#39;Specify a cohort&#39;</span><span class="p">)</span>
<span class="n">resolution</span> <span class="o">=</span> <span class="n">InputMultiObject</span><span class="p">(</span><span class="n">traits</span><span class="o">.</span><span class="n">Int</span><span class="p">,</span> <span class="n">desc</span><span class="o">=</span><span class="s1">&#39;Specify a template resolution index&#39;</span><span class="p">)</span>
<span class="n">template_spec</span> <span class="o">=</span> <span class="n">traits</span><span class="o">.</span><span class="n">DictStrAny</span><span class="p">(</span>
<span class="p">{</span><span class="s1">&#39;atlas&#39;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span> <span class="s1">&#39;cohort&#39;</span><span class="p">:</span> <span class="kc">None</span><span class="p">},</span> <span class="n">usedefault</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">desc</span><span class="o">=</span><span class="s1">&#39;Template specifications&#39;</span>
<span class="n">template_spec</span> <span class="o">=</span> <span class="n">traits</span><span class="o">.</span><span class="n">Dict</span><span class="p">(</span>
<span class="n">traits</span><span class="o">.</span><span class="n">Str</span><span class="p">,</span>
<span class="n">value</span><span class="o">=</span><span class="p">{</span><span class="s1">&#39;atlas&#39;</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span> <span class="s1">&#39;cohort&#39;</span><span class="p">:</span> <span class="kc">None</span><span class="p">},</span>
<span class="n">usedefault</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
<span class="n">desc</span><span class="o">=</span><span class="s1">&#39;Template specifications&#39;</span><span class="p">,</span>
<span class="p">)</span>


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</dl>
<dl>
<dt>Branches</dt>
<dd><a href="../../../../dependabot_github_actions_codecov_codecov-action-5/index.html">dependabot/github_actions/codecov/codecov-action-5</a></dd>
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<meta charset="utf-8" />
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<title>smriprep.utils.bids &mdash; smriprep 0.16.2.dev5 documentation</title>
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</dl>
<dl>
<dt>Branches</dt>
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<meta charset="utf-8" />
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</dl>
<dl>
<dt>Branches</dt>
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<head>
<meta charset="utf-8" />
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<title>smriprep.workflows.anatomical &mdash; smriprep 0.16.2.dev5 documentation</title>
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</dl>
<dl>
<dt>Branches</dt>
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<meta charset="utf-8" />
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<title>smriprep.workflows.base &mdash; smriprep 0.16.2.dev5 documentation</title>
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