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Revisiting Knowledge-Based Inference of Python Runtime Environments: A Realistic and Adaptive Approach

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ReadPyE

Revisiting Knowledge-Based Inference of Python Runtime Environments: A Realistic and Adaptive Approach

Dependencies

This project is developed using Python 3.8.11 on Ubuntu 18.04 LTS. Install the required Python packages:

pip install -r requirements.txt

Tree-sitter setup:

mkdir $LANGUAGE_DIR
cd $LANGUAGE_DIR; mkdir build vendor
cd vendor; git clone https://github.com/tree-sitter/tree-sitter-python

Install Docker and Neo4j (requires Java SE 11):

Name Version
Docker 20.10.22
Neo4j 4.3.10

We have openned our pre-built knowledge graphs (for package sets S0 and S1), self-built IntegrGitHub dataset, and experimental results as two online resources: resource 0 and resource 1.

Restore one database dump:

$NEO4J_HOME/bin/neo4j-admin load --from=xxx.dump --database=neo4j --force

APOC Core is required: moving the APOC jar file from the $NEO4J_HOME/labs directory to the $NEO4J_HOME/plugins directory and restarting Neo4j:

$NEO4J_HOME/bin/neo4j start

Config neo4j database by editing utils/variables.py:

NEO4J_URI = 'YOUR NEO4J URI'
NEO4J_USER = 'YOUR NEO4J USERNAME'
NEO4J_PWD = 'YOUR NEO4J PASSWORD'

Usage

The API of ReadPyE is AutomaticInference.main in run.py.

You can use ReadPyE in commands. See the helps by

python run.py -h

*Note that one-time use via the command line is inefficient, as some resources are required to be loaded.

Example

Use ReadPyE without iterative validation:

python run.py -l $LANGUAGE_DIR -p examples/3979513/snippet.py

The inferred Dockerfile is:

FROM python:2.7.18
RUN pip install --upgrade pip
RUN pip install twisted==20.3
RUN pip install zope-interface==5.5.dev0

The validation result in environment-related exception:

Traceback (most recent call last):
File "snippet.py", line 12, in <module>
    from twisted.conch import error, avatar
File "/usr/local/lib/python2.7/site-packages/twisted/conch/avatar.py", line 9, in <module>
    from twisted.conch.ssh.connection import OPEN_UNKNOWN_CHANNEL_TYPE
File "/usr/local/lib/python2.7/site-packages/twisted/conch/ssh/connection.py", line 17, in <module>
    from twisted.conch.ssh import service, common
File "/usr/local/lib/python2.7/site-packages/twisted/conch/ssh/common.py", line 15, in <module>
    from cryptography.utils import int_from_bytes, int_to_bytes
ImportError: No module named cryptography.utils

Use complete ReadPyE:

python run.py -l $LANGUAGE_DIR -p examples/3979513/snippet.py -s examples/3979513/validation_settings.json

The inferred Dockerfile is: ✅

FROM python:2.7.18
RUN pip install --upgrade pip
RUN pip install twisted==20.3
RUN pip install cryptography==3.3.2
RUN pip install bcrypt==3.1.7
RUN pip install pyasn1==0.5rc1
RUN pip install mysqlclient==1.4.6
RUN pip install zope-interface==5.5.dev0

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Revisiting Knowledge-Based Inference of Python Runtime Environments: A Realistic and Adaptive Approach

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