v0.4.1

Maintenance

• NumPy 2.0 support and backwards compatibility:
  • NumPy 2.x is now required at build time, so that binaries work on NumPy 1.xx and 2.x.
  • Dropped wheels for py38, added py313.

Full Changelog: v0.4.0...v0.4.1

v0.4.0

New features

• Exact (non-interpolated) summary calculation on binned ranges using fetch(chrom, start, end, ..., exact=True) (#33)
• Zoom record queries via fetch_summaries() (#33)

Full Changelog: v0.3.6...v0.4.0

v0.3.6

This release is only to mint an initial Zenodo DOI.

v0.3.5

Changes:

• Replace OrderedDict in favor of regular dict for f.info: #28

Docs:

• Clarify behavior of f.stackup when bins= is provided: #28

v0.3.4

This version restores the full build process (UCSC library and Cython extension module) when installing from source through pip.

v0.3.3

Version bump to release binary wheels for Python 3.11

v0.3.2

Maintenance/bug fix

Removed internal usage of six (was dropped as requirement in previous release).

v0.3.1

Maintenance

• Removed hard-coded library path in setup.py assuming x86-64 architecture to support build on other architectures like Apple Silicon aarch64. By @pkerpedjiev (#18)

Full Changelog: v0.3.0...v0.3.1

v0.3.0

New features

• Refactored bbi functions into a cdef class BBIFile obtained with bbi.open() (#13). The function API is preserved.
• BBIFile adds support to read and parse a bigBed's AutoSql schema definition
• AutoSql scalar types are mapped to numpy/pandas dtypes
• AutoSql listed/array types or other exotic types are treated as regular strings

API changes

• fetch_intervals takes an additional iterator parameter. If True, it will return an interval iterator (of tuples) with the same behavior as in v0.2. If False, returns a dataframe with columns correctly parsed using the AutoSql schema. The class method returns a dataframe by default, and the function returns the iterator by default to preserve existing behavior.
• Python 2.7 support has been dropped.

v0.2.3

• Add summary statistic sum #12