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Merge pull request #277 from obophenotype/add_term_'docosatrienoate-a…
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…mount'_for_GWAS

Added new OBA term + update imports
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@ar-ibrahim
ar-ibrahim authored Aug 3, 2023
2 parents f501dfb + ecefe98 commit 4f075bc
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Showing 3 changed files with 175 additions and 103 deletions.
68 changes: 65 additions & 3 deletions src/ontology/imports/merged_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -897,6 +897,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27232>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27237>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27242>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27266>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27283>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27288>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27300>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_27314>))
Expand Down Expand Up @@ -2286,6 +2287,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58856>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58944>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58945>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58946>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58950>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58951>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58953>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_58954>))
Expand Down Expand Up @@ -2803,6 +2805,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_79387>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_79388>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_79389>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_8028>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_80549>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_80630>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_8093>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_8107>))
Expand Down Expand Up @@ -4581,6 +4584,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000011>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000015>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000018>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000035>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000038>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000041>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000045>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000050>))
Expand Down Expand Up @@ -9780,6 +9784,8 @@ Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042755>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042756>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042758>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042759>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042760>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042761>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042762>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042776>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0042777>))
Expand Down Expand Up @@ -49754,7 +49760,7 @@ SubObjectPropertyOf(<http://purl.obolibrary.org/obo/GOREL_0002004> <http://purl.
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MONDO_0100332> "disease has primary infectious agent")
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/MONDO_0100332> <http://purl.obolibrary.org/obo/RO_0014001>)

# Object Property: <http://purl.obolibrary.org/obo/RO_0000052> (inheres in)
# Object Property: <http://purl.obolibrary.org/obo/RO_0000052> (characteristic of)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000111> <http://purl.obolibrary.org/obo/RO_0000052> "inheres in"@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000112> <http://purl.obolibrary.org/obo/RO_0000052> "this fragility is a characteristic of this vase"@en)
Expand Down Expand Up @@ -51047,7 +51053,7 @@ AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/RO_0002305> <ht
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002305> <http://purl.obolibrary.org/obo/RO_0002411>)
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0002305> <http://purl.obolibrary.org/obo/RO_0004046>)

# Object Property: <http://purl.obolibrary.org/obo/RO_0002314> (characteristic of part of)
# Object Property: <http://purl.obolibrary.org/obo/RO_0002314> (inheres in part of)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0002314> "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/RO_0002314> "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of")
Expand Down Expand Up @@ -52223,7 +52229,7 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0004023> "caus
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0004023> <http://purl.obolibrary.org/obo/RO_0002410>)
SubObjectPropertyOf(<http://purl.obolibrary.org/obo/RO_0004023> <http://purl.obolibrary.org/obo/RO_0040035>)

# Object Property: <http://purl.obolibrary.org/obo/RO_0004024> (disease causes disruption of)
# Object Property: <http://purl.obolibrary.org/obo/RO_0004024> (disease disrupts)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0004024> "A relationship between a disease and a process where the disease process disrupts the execution of the process.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000589> <http://purl.obolibrary.org/obo/RO_0004024> "disease causes disruption of (disease to process)")
Expand Down Expand Up @@ -62073,6 +62079,18 @@ SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27266> ObjectSomeValuesFrom(<ht
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27266> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_32859>))
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27266> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_32860>))

# Class: <http://purl.obolibrary.org/obo/CHEBI_27283> (very long-chain fatty acid)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_27283> "A fatty acid which has a chain length greater than C22. Very long-chain fatty acids which have a chain length greater than C27 are also known as ultra-long-chain fatty acids.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/charge> <http://purl.obolibrary.org/obo/CHEBI_27283> "0")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/formula> <http://purl.obolibrary.org/obo/CHEBI_27283> "CH2OR")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/mass> <http://purl.obolibrary.org/obo/CHEBI_27283> "45.017")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/monoisotopicmass> <http://purl.obolibrary.org/obo/CHEBI_27283> "44.99765")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/smiles> <http://purl.obolibrary.org/obo/CHEBI_27283> "OC([*])=O")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_27283> "very long-chain fatty acid")
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27283> <http://purl.obolibrary.org/obo/CHEBI_35366>)
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_27283> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_acid_of> <http://purl.obolibrary.org/obo/CHEBI_58950>))

# Class: <http://purl.obolibrary.org/obo/CHEBI_27288> (vinca alkaloid)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_27288> "A group of indole-indoline dimers which are alkaloids obtained from the Vinca genus of plants, together with semi-synthetic and fully synthetic analogues.")
Expand Down Expand Up @@ -75326,6 +75344,18 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.ob
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_58946> "acyl-CoA oxoanion")
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_58946> <http://purl.obolibrary.org/obo/CHEBI_58945>)

# Class: <http://purl.obolibrary.org/obo/CHEBI_58950> (very long-chain fatty acid anion)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_58950> "Any fatty acid anion with a chain length greater than C22.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/charge> <http://purl.obolibrary.org/obo/CHEBI_58950> "-1")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/formula> <http://purl.obolibrary.org/obo/CHEBI_58950> "CO2R")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/mass> <http://purl.obolibrary.org/obo/CHEBI_58950> "44.010")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/monoisotopicmass> <http://purl.obolibrary.org/obo/CHEBI_58950> "43.98983")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/smiles> <http://purl.obolibrary.org/obo/CHEBI_58950> "[O-]C([*])=O")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_58950> "very long-chain fatty acid anion")
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_58950> <http://purl.obolibrary.org/obo/CHEBI_28868>)
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_58950> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#is_conjugate_base_of> <http://purl.obolibrary.org/obo/CHEBI_27283>))

# Class: <http://purl.obolibrary.org/obo/CHEBI_58951> (short-chain fatty acid anion)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_58951> "Any fatty acid anion obtained by removal of a proton from the carboxy group of a short-chain fatty acid (chain length of less than C6).")
Expand Down Expand Up @@ -79955,6 +79985,18 @@ SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_8028> ObjectSomeValuesFrom(<htt
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_8028> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_50919>))
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_8028> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_37931>))

# Class: <http://purl.obolibrary.org/obo/CHEBI_80549> (13,16,19-Docosatrienoic acid)

AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/charge> <http://purl.obolibrary.org/obo/CHEBI_80549> "0")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/formula> <http://purl.obolibrary.org/obo/CHEBI_80549> "C22H38O2")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/inchi> <http://purl.obolibrary.org/obo/CHEBI_80549> "InChI=1S/C22H38O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22(23)24/h3-4,6-7,9-10H,2,5,8,11-21H2,1H3,(H,23,24)/b4-3+,7-6+,10-9+")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/inchikey> <http://purl.obolibrary.org/obo/CHEBI_80549> "WBBQTNCISCKUMU-IUQGRGSQSA-N")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/mass> <http://purl.obolibrary.org/obo/CHEBI_80549> "334.53590")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/monoisotopicmass> <http://purl.obolibrary.org/obo/CHEBI_80549> "334.28718")
AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/smiles> <http://purl.obolibrary.org/obo/CHEBI_80549> "CC\\C=C\\C\\C=C\\C\\C=C\\CCCCCCCCCCCC(O)=O")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_80549> "13,16,19-Docosatrienoic acid")
SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_80549> <http://purl.obolibrary.org/obo/CHEBI_27283>)

# Class: <http://purl.obolibrary.org/obo/CHEBI_80630> (irinotecan)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_80630> "A member of the class of pyranoindolizinoquinolines that is the carbamate ester obtained by formal condensation of the carboxy group of [1,4'-bipiperidine]-1'-carboxylic acid with the phenolic hydroxy group of (4S)-4,11-diethyl-4,9-dihydroxy-1H-pyrano[3',4':6,7]indolizino[1,2- hydrochloride]quinoline-3,14-dione. Used (in the form of its hydrochloride salt trihydrate) in combination with fluorouracil and leucovorin, for the treatment of patients with metastatic adenocarcinoma of the pancreas after disease progression following gemcitabine-based therapy. It is converted via hydrolysis of the carbamate linkage to its active metabolite, SN-38, which is ~1000 times more active.")
Expand Down Expand Up @@ -94932,6 +94974,12 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0000035> "acyl
EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0000035> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0005488> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> <http://purl.obolibrary.org/obo/CHEBI_22221>)))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0000035> <http://purl.obolibrary.org/obo/GO_0005488>)

# Class: <http://purl.obolibrary.org/obo/GO_0000038> (very long-chain fatty acid metabolic process)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0000038> "very long-chain fatty acid metabolic process")
EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0000038> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0008152> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0004007> <http://purl.obolibrary.org/obo/CHEBI_58950>)))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0000038> <http://purl.obolibrary.org/obo/GO_0006631>)

# Class: <http://purl.obolibrary.org/obo/GO_0000041> (transition metal ion transport)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0000041> "transition metal ion transport")
Expand Down Expand Up @@ -133398,6 +133446,20 @@ EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0042759> ObjectIntersection
SubClassOf(<http://purl.obolibrary.org/obo/GO_0042759> <http://purl.obolibrary.org/obo/GO_0001676>)
SubClassOf(<http://purl.obolibrary.org/obo/GO_0042759> <http://purl.obolibrary.org/obo/GO_0006633>)

# Class: <http://purl.obolibrary.org/obo/GO_0042760> (very long-chain fatty acid catabolic process)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0042760> "very long-chain fatty acid catabolic process")
EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0042760> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0009056> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0004009> <http://purl.obolibrary.org/obo/CHEBI_58950>)))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0042760> <http://purl.obolibrary.org/obo/GO_0000038>)
SubClassOf(<http://purl.obolibrary.org/obo/GO_0042760> <http://purl.obolibrary.org/obo/GO_0009062>)

# Class: <http://purl.obolibrary.org/obo/GO_0042761> (very long-chain fatty acid biosynthetic process)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0042761> "very long-chain fatty acid biosynthetic process")
EquivalentClasses(<http://purl.obolibrary.org/obo/GO_0042761> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/GO_0009058> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0004008> <http://purl.obolibrary.org/obo/CHEBI_58950>)))
SubClassOf(<http://purl.obolibrary.org/obo/GO_0042761> <http://purl.obolibrary.org/obo/GO_0000038>)
SubClassOf(<http://purl.obolibrary.org/obo/GO_0042761> <http://purl.obolibrary.org/obo/GO_0006633>)

# Class: <http://purl.obolibrary.org/obo/GO_0042762> (regulation of sulfur metabolic process)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/GO_0042762> "regulation of sulfur metabolic process")
Expand Down
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