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18 Open 11 Closed
18 Open 11 Closed
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Issues list

accept fasta file for load_genomic_breaks()
#30 opened Jul 24, 2024 by johannesnicolaus
1
isReduced() enhancement New feature or request
#29 opened Jan 18, 2024 by charles-plessy
Reconsider cleanGaps as of GRanges 1.54.0 enhancement New feature or request
#28 opened Nov 30, 2023 by charles-plessy
guessSeqLengths should return a vector, not an array bug Something isn't working
#27 opened Jun 20, 2023 by charles-plessy
Add functions to compute percent identity etc. enhancement New feature or request
#26 opened May 30, 2023 by charles-plessy
Add L50 to summaries related to widths enhancement New feature or request
#23 opened Feb 10, 2023 by charles-plessy
Implement ρ and λ measures of synteny from Housworth and Postlethwait 2002 enhancement New feature or request
#22 opened Jul 1, 2022 by charles-plessy
+ operator should extend both the target and the query ranges
#21 opened Jun 3, 2022 by charles-plessy
Functions to align flanks of breakpoing regions. enhancement New feature or request
#19 opened Jun 2, 2022 by charles-plessy
Add a new function to fill inversions. enhancement New feature or request
#18 opened Jun 2, 2022 by charles-plessy
flagLongShort outputs wrong flages on non-sorted GBreaks objects. bug Something isn't working
#17 opened May 11, 2022 by charles-plessy
Implement a r distance index
#16 opened Apr 27, 2022 by charles-plessy
Dockerfile fails to build
#15 opened Apr 15, 2022 by mjmansfi
1
A stringDist() method for GBreaks
#14 opened Mar 14, 2022 by charles-plessy
cleanGaps: support colinear GBreaks objects and zero-width ranges.
#12 opened Feb 8, 2022 by charles-plessy
Add a converter from _CNEr_'s Axt and GPairs format to GBreaks enhancement New feature or request
#11 opened Jan 17, 2022 by charles-plessy
?GBreaks shouild open the help of the constructor documentation Improvements or additions to documentation
#10 opened Jan 17, 2022 by charles-plessy
The GBreaks constructor should better handle the strand of the target and query GRanges. bug Something isn't working
#9 opened Jan 17, 2022 by charles-plessy
ProTip! Adding no:label will show everything without a label.