Give more time. Large genomes generate a lot of I/O and need it.

oist · Oct 30, 2024 · 8d7d144 · 8d7d144
1 parent 370f965
commit 8d7d144
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/conf/base.config b/conf/base.config
@@ -26,12 +26,12 @@ process {
     withLabel:process_single {
         cpus   = { check_max( 2                  , 'cpus'    ) }
         memory = { check_max( 2.GB * task.attempt, 'memory'  ) }
-        time   = { check_max( 2.h  * task.attempt, 'time'    ) }
+        time   = { check_max( 3.h  * task.attempt, 'time'    ) }
     }
     withLabel:process_low {
         cpus   = { check_max( 2     * task.attempt, 'cpus'    ) }
         memory = { check_max( params.assemblyscan_memory as nextflow.util.MemoryUnit * task.attempt, 'memory'  ) }
-        time   = { check_max( 1.h   * task.attempt, 'time'    ) }
+        time   = { check_max( 2.h   * task.attempt, 'time'    ) }
     }
     withLabel:process_medium {
         cpus   = { check_max( 6     * task.attempt, 'cpus'    ) }