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ver1.2.0 release #631

Merged
merged 296 commits into from
Mar 28, 2024
Merged

ver1.2.0 release #631

merged 296 commits into from
Mar 28, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Nov 30, 2023

  1. fix bug when add mutil ROI

    @sanglevinh
    sanglevinh committed Nov 30, 2023
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  2. fix warning

    @sanglevinh
    sanglevinh committed Nov 30, 2023
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  3. Merge branch 'develop-main' into feature/add_ROI_edit 

    # Conflicts:
#	frontend/src/components/Workspace/Visualize/VisualizeItemLayoutMenuIcon.tsx
    @sanglevinh
    sanglevinh committed Nov 30, 2023
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  4. add onCancel when click button close visualize

    @sanglevinh
    sanglevinh committed Nov 30, 2023
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Commits on Dec 1, 2023

  1. fix call cancel edit roi

    @sanglevinh
    sanglevinh committed Dec 1, 2023
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  2. Merge remote-tracking branch 'origin' into feature/add_ROI_edit

    @ReiHashimoto
    ReiHashimoto committed Dec 1, 2023
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  3. remove file VisualizeItemLayoutMenuIcon

    @sanglevinh
    sanglevinh committed Dec 1, 2023
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  4. handle exception

    @quanpython
    quanpython committed Dec 1, 2023
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  5. update dependences function handleClose

    @sanglevinh
    sanglevinh committed Dec 1, 2023
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  6. rollback file VisualizeItem

    @sanglevinh
    sanglevinh committed Dec 1, 2023
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  7. fix reload timeseries when commit edit roi

    @sanglevinh
    sanglevinh committed Dec 1, 2023
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Commits on Dec 4, 2023

  1. Merge branch 'develop-main' into feature/disable_when_run_workflow 

    # Conflicts:
#	frontend/src/components/Workspace/Experiment/Button/ReproduceButton.tsx
#	frontend/src/components/Workspace/FlowChart/Buttons/ClearWorkflow.tsx
    @sanglevinh
    sanglevinh committed Dec 4, 2023
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  2. resolve conflic

    @sanglevinh
    sanglevinh committed Dec 4, 2023
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  3. add catch when cancel error

    @sanglevinh
    sanglevinh committed Dec 4, 2023
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  4. allow download file from url

    @quanpython
    quanpython committed Dec 4, 2023
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Commits on Dec 5, 2023

  1. Merge branch 'develop-main' into feature/disable_when_run_workflow 

    # Conflicts:
#	frontend/src/components/Workspace/FlowChart/Buttons/ImportWorkflowConfig.tsx
    @sanglevinh
    sanglevinh committed Dec 5, 2023
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  2. change when to call cancel api and hide edit roi when not cell_roi.json

    @sanglevinh
    sanglevinh committed Dec 5, 2023
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  3. add unmount when close (x) and rollback VisualizeItem.tsx

    @sanglevinh
    sanglevinh committed Dec 5, 2023
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  4. fix duplicate loading

    @sanglevinh
    sanglevinh committed Dec 5, 2023
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  5. Merge branch 'develop-main' into feature/add_ROI_edit 

    # Conflicts:
#	frontend/src/components/Workspace/Visualize/Plot/ImagePlot.tsx
    @sanglevinh
    sanglevinh committed Dec 5, 2023
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  6. fix bug dont back to edit top when delete and merge ROI, refactor text

    @sanglevinh
    sanglevinh committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. change download api method

    @quanpython
    quanpython committed Dec 6, 2023
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Commits on Dec 7, 2023

  1. use redux with action ROI and change loading

    @sanglevinh
    sanglevinh committed Dec 7, 2023
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  2. refactor code

    @sanglevinh
    sanglevinh committed Dec 7, 2023
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  3. Merge branch 'develop-main' into feature/add_ROI_edit

    @sanglevinh
    sanglevinh committed Dec 7, 2023
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Commits on Dec 8, 2023

  1. change icon and add feature upload via url

    @sanglevinh
    sanglevinh committed Dec 8, 2023
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  2. Block invalid files

    @sanglevinh
    sanglevinh committed Dec 8, 2023
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  3. Merge branch 'develop-main' into feature/up_load_url_link

    @sanglevinh
    sanglevinh committed Dec 8, 2023
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Commits on Dec 11, 2023

  1. fix loading comment

    @sanglevinh
    sanglevinh committed Dec 11, 2023
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  2. fix csv with header

    @ReiHashimoto
    ReiHashimoto committed Dec 11, 2023
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  3. fix not cancel when press (X)

    @sanglevinh
    sanglevinh committed Dec 11, 2023
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  4. remove console and add eslint-disable

    @sanglevinh
    sanglevinh committed Dec 11, 2023
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  5. add motion corrected image to suite2p result

    @ReiHashimoto
    ReiHashimoto committed Dec 11, 2023
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  6. use copied data

    @ReiHashimoto
    ReiHashimoto committed Dec 11, 2023
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Commits on Dec 12, 2023

  1. handle input tiff image with dtype is float32

    @quanpython
    quanpython committed Dec 12, 2023
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  2. make setting header back to null available

    @ReiHashimoto
    ReiHashimoto committed Dec 12, 2023
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  3. add condition loading

    @sanglevinh
    sanglevinh committed Dec 12, 2023
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Commits on Dec 13, 2023

  1. fix condition cancel

    @sanglevinh
    sanglevinh committed Dec 13, 2023
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  2. save converted tiff file in output_dir

    @quanpython
    quanpython committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. remove unused import

    @sanglevinh
    sanglevinh committed Dec 14, 2023
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  2. fix download status

    @quanpython
    quanpython committed Dec 14, 2023
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  3. add status download

    @sanglevinh
    sanglevinh committed Dec 14, 2023
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Commits on Dec 15, 2023

  1. remove icon setting behavior and fluo node

    @sanglevinh
    sanglevinh committed Dec 15, 2023
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  2. fix condition dispatch setInputNodeFilePath

    @sanglevinh
    sanglevinh committed Dec 15, 2023
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Commits on Dec 18, 2023

  1. add matlab node

    @sanglevinh
    sanglevinh committed Dec 18, 2023
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  2. fix UI node container

    @sanglevinh
    sanglevinh committed Dec 18, 2023
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  3. change file type, add message validate url, setOpen popup

    @sanglevinh
    sanglevinh committed Dec 18, 2023
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  4. fix not load file csv from via url

    @sanglevinh
    sanglevinh committed Dec 18, 2023
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  5. Merge branch 'feature/download-file-from-url' into feature/check-tiff… 

    …-format-when-upload
    @quanpython
    quanpython committed Dec 18, 2023
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  6. get tiff shape when upload, download file

    @quanpython
    quanpython committed Dec 18, 2023
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Commits on Dec 19, 2023

  1. add node matlab

    @sanglevinh
    sanglevinh committed Dec 19, 2023
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Commits on Dec 20, 2023

  1. add microscope data reader modules (initial) 

    add nikon nd2 reader modules
    itutu-tienday committed Dec 20, 2023
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  2. apply formatter

    itutu-tienday committed Dec 20, 2023
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  3. add init member variables

    itutu-tienday committed Dec 20, 2023
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  4. remove MatlabPlot

    @sanglevinh
    sanglevinh committed Dec 20, 2023
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  5. add shape tiff, update shape

    @sanglevinh
    sanglevinh committed Dec 20, 2023
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Commits on Dec 21, 2023

  1. Merge pull request #194 from arayabrain/feature/disable_when_run_work… 

    …flow

Disable workflow editing
    @ReiHashimoto
    ReiHashimoto authored Dec 21, 2023
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  2. Merge pull request #233 from arayabrain/feature/fix-csv-with-header 

    fix csv with header
    @ReiHashimoto
    ReiHashimoto authored Dec 21, 2023
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  3. Merge pull request #234 from arayabrain/feature/suite2p-image-output 

    Feature/suite2p image output
    @ReiHashimoto
    ReiHashimoto authored Dec 21, 2023
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  4. docker image verup 

    - python:3.8.16-slim -> python:3.8.18-slim
    tienday committed Dec 21, 2023
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  5. Added explicit loading of other libraries on which the microscopy lib… 

    …rary depends
    tienday committed Dec 21, 2023
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  6. docker image verup 

    - python:3.8.16-slim -> python:3.8.18-slim
    tienday committed Dec 21, 2023
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  7. Merge branch 'develop-main' into feature/up_load_url_link 

    # Conflicts:
#	frontend/src/components/Workspace/FlowChart/FlowChartNode/FileSelect.tsx
    @sanglevinh
    sanglevinh committed Dec 21, 2023
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  8. fix typo

    tienday committed Dec 21, 2023
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  9. check condition setting icon node fluo and, behavior

    @sanglevinh
    sanglevinh committed Dec 21, 2023
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  10. fix fileType, add nameNode

    @sanglevinh
    sanglevinh committed Dec 21, 2023
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  11. add dataType, change UI

    @sanglevinh
    sanglevinh committed Dec 21, 2023
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  12. fix load api file when upload file

    @sanglevinh
    sanglevinh committed Dec 21, 2023
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Commits on Dec 22, 2023

  1. Merge pull request #217 from arayabrain/feature/download-file-from-url 

    Allow upload file via URL
    @ReiHashimoto
    ReiHashimoto authored Dec 22, 2023
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  2. Merge pull request #231 from arayabrain/feature/up_load_url_link 

    Feature upload via url
    @ReiHashimoto
    ReiHashimoto authored Dec 22, 2023
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  3. Merge pull request #251 from arayabrain/feature/docker-image-verup 

    docker image verup
    @ReiHashimoto
    ReiHashimoto authored Dec 22, 2023
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  4. Merge branch 'develop-main' into feature/check_format_tiff_file 

    # Conflicts:
#	frontend/src/api/files/Files.ts
#	frontend/src/store/slice/FileUploader/FileUploaderActions.ts
    @sanglevinh
    sanglevinh committed Dec 22, 2023
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  5. fix condition error shape, UI

    @sanglevinh
    sanglevinh committed Dec 22, 2023
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  6. Merge branch 'develop-main' into feature/matlab

    @sanglevinh
    sanglevinh committed Dec 22, 2023
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  7. fix param run matlab

    @sanglevinh
    sanglevinh committed Dec 22, 2023
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  8. fix ellipsis text

    @sanglevinh
    sanglevinh committed Dec 22, 2023
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  9. allow upload and display matlab structure

    @quanpython
    quanpython committed Dec 22, 2023
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  10. display matlab tree

    @quanpython
    quanpython committed Dec 22, 2023
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  11. update MatNode schemas

    @quanpython
    quanpython committed Dec 22, 2023
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  12. add MatlabFileNode

    @quanpython
    quanpython committed Dec 22, 2023
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  13. fix matlab file type

    @quanpython
    quanpython committed Dec 22, 2023
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Commits on Dec 25, 2023

  1. Merge pull request #240 from arayabrain/feature/verify-tiff-image-input 

    Handle input tiff image with dtype is float32
    @ReiHashimoto
    ReiHashimoto authored Dec 25, 2023
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  2. Merge pull request #107 from arayabrain/improve-edit-roi 

    Improve edit roi feature
    @ReiHashimoto
    ReiHashimoto authored Dec 25, 2023
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  3. Merge branch 'develop-main' into feature/add_ROI_edit

    @ReiHashimoto
    ReiHashimoto committed Dec 25, 2023
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  4. Merge pull request #106 from arayabrain/feature/add_ROI_edit 

    Feature/add roi edit
    @ReiHashimoto
    ReiHashimoto authored Dec 25, 2023
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  5. Merge branch 'develop-main' into feature/matlab 

    # Conflicts:
#	frontend/src/store/slice/DisplayData/DisplayDataActions.ts
    @sanglevinh
    sanglevinh committed Dec 25, 2023
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  6. fix UI

    @sanglevinh
    sanglevinh committed Dec 25, 2023
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  7. change icon, used Divider Component

    @sanglevinh
    sanglevinh committed Dec 25, 2023
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Commits on Dec 26, 2023

  1. change testdata path

    tienday committed Dec 26, 2023
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  2. Merge pull request #248 from arayabrain/feature/microscope/nikon 

    add microscope data reader modules (initial)
    @itutu-tienday
    itutu-tienday authored Dec 26, 2023
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  3. Merge branch 'feature/microscope/nikon' into feature/microscope/main

    tienday committed Dec 26, 2023
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  4. fix UI node, and fix warning

    @sanglevinh
    sanglevinh committed Dec 26, 2023
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  5. remove isMatlabItem

    @sanglevinh
    sanglevinh committed Dec 26, 2023
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  6. create Inscopix isxd reader module

    tienday committed Dec 26, 2023
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  7. create olympus oir reader mock

    tienday committed Dec 26, 2023
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Commits on Dec 27, 2023

  1. fix get shape of nested file, add indent for json format

    @quanpython
    quanpython committed Dec 27, 2023
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  2. fix tests

    @quanpython
    quanpython committed Dec 27, 2023
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  3. support matlab v7.3

    @quanpython
    quanpython committed Dec 27, 2023
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Commits on Dec 28, 2023

  1. refactoring (use list comprehension, etc)

    itutu-tienday committed Dec 28, 2023
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  2. fix linter

    tienday committed Dec 28, 2023
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  3. update nikon metadata retrieval code

    tienday committed Dec 28, 2023
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Commits on Dec 29, 2023

  1. improved highlight run

    @sanglevinh
    sanglevinh committed Dec 29, 2023
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  2. fix data test

    @sanglevinh
    sanglevinh committed Dec 29, 2023
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  3. fix data file test

    @sanglevinh
    sanglevinh committed Dec 29, 2023
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  4. Added nikon image stack loading process

    tienday committed Dec 29, 2023
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  5. Merge branch 'feature/microscope/nikon' into feature/microscope/olympus

    itutu-tienday committed Dec 29, 2023
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Commits on Jan 5, 2024

  1. ignore attributes startwith #

    @quanpython
    quanpython committed Jan 5, 2024
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  2. keep checking the ancestor node's status.

    @sanglevinh
    sanglevinh committed Jan 5, 2024
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  3. fix data file test

    @sanglevinh
    sanglevinh committed Jan 5, 2024
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Commits on Jan 8, 2024

  1. use pymatreader to read matlab file

    @quanpython
    quanpython committed Jan 8, 2024
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Commits on Jan 9, 2024

  1. Merge pull request #257 from arayabrain/feature/microscope/inscopix 

    create Inscopix isxd reader module
    @itutu-tienday
    itutu-tienday authored Jan 9, 2024
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  2. Merge pull request #262 from arayabrain/feature/microscope/nikon 

    Added nikon image stack loading process
    @itutu-tienday
    itutu-tienday authored Jan 9, 2024
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  3. Merge branch 'feature/microscope/main' into feature/microscope/olympus

    tienday committed Jan 9, 2024
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  4. Merge pull request #225 from arayabrain/feature/allow-upload-and-disp… 

    …lay-matlab-file

Allow upload and display matlab structure
    @ReiHashimoto
    ReiHashimoto authored Jan 9, 2024
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  5. Merge pull request #247 from arayabrain/feature/matlab 

    Allows importing data in Matlab format
    @ReiHashimoto
    ReiHashimoto authored Jan 9, 2024
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  6. change originalValue to isUpdated

    @sanglevinh
    sanglevinh committed Jan 9, 2024
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Commits on Jan 10, 2024

  1. Merge pull request #260 from arayabrain/feature/improved_highlight 

    Improved RUN target highlights
    @ReiHashimoto
    ReiHashimoto authored Jan 10, 2024
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  2. Merge remote-tracking branch 'origin/develop-main' into feature/check… 

    …-tiff-format-when-upload
    @quanpython
    quanpython committed Jan 10, 2024
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Commits on Jan 11, 2024

  1. fix not params to be sorted after reproduce

    @ReiHashimoto
    ReiHashimoto committed Jan 11, 2024
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  2. update docker settings for frontend builder

    itutu-tienday committed Jan 11, 2024
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  3. Merge pull request #267 from arayabrain/feature/add-fe-build-docker 

    update docker settings for frontend builder
    @itutu-tienday
    itutu-tienday authored Jan 11, 2024
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  4. improve docker volume performance (use cached)

    itutu-tienday committed Jan 11, 2024
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  5. Merge pull request #268 from arayabrain/feature/add-fe-build-docker 

    improve docker volume performance (use cached)
    @itutu-tienday
    itutu-tienday authored Jan 11, 2024
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Commits on Jan 12, 2024

  1. fix reset password and search

    @sanglevinh
    sanglevinh committed Jan 12, 2024
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Commits on Jan 15, 2024

  1. remove unused file

    @ReiHashimoto
    ReiHashimoto committed Jan 15, 2024
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  2. fix button colors in workflow tab

    @ReiHashimoto
    ReiHashimoto committed Jan 15, 2024
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  3. disable reproduce button while running workflow

    @ReiHashimoto
    ReiHashimoto committed Jan 15, 2024
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  4. Merge pull request #272 from arayabrain/feature/fix-disable-buttons 

    fix disable buttons while running workflow
    @ReiHashimoto
    ReiHashimoto authored Jan 15, 2024
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  5. use tifffile to get image shape

    @quanpython
    quanpython committed Jan 15, 2024
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Commits on Jan 16, 2024

  1. Merge pull request #266 from arayabrain/feature/fix-sort-params 

    fix not params to be sorted after reproduce
    @ReiHashimoto
    ReiHashimoto authored Jan 16, 2024
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  2. Merge branch 'develop-main' into feature/check_format_tiff_file

    @sanglevinh
    sanglevinh committed Jan 16, 2024
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  3. Merge pull request #270 from arayabrain/feature/fix_search_and_reset_… 

    …password

fix reset password and search
    @ReiHashimoto
    ReiHashimoto authored Jan 16, 2024
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  4. Merge remote-tracking branch 'origin/feature/check-tiff-format-when-u… 

    …pload' into feature/check_format_tiff_file
    @sanglevinh
    sanglevinh committed Jan 16, 2024
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  5. fix icon folder

    @sanglevinh
    sanglevinh committed Jan 16, 2024
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  6. disable icon reload when isDir

    @sanglevinh
    sanglevinh committed Jan 16, 2024
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  7. fix height file

    @sanglevinh
    sanglevinh committed Jan 16, 2024
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Commits on Jan 17, 2024

  1. Merge pull request #253 from arayabrain/feature/check_format_tiff_file 

    tiff file format check
    @ReiHashimoto
    ReiHashimoto authored Jan 17, 2024
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  2. Merge branch 'develop-main' into feature/check-tiff-format-when-upload

    @ReiHashimoto
    ReiHashimoto authored Jan 17, 2024
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  3. fix conflicts

    @ReiHashimoto
    ReiHashimoto committed Jan 17, 2024
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  4. Merge pull request #245 from arayabrain/feature/check-tiff-format-whe… 

    …n-upload

Check tiff format when upload, download file
    @ReiHashimoto
    ReiHashimoto authored Jan 17, 2024
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Commits on Jan 20, 2024

  1. update nd2reader 

    - supports multi-channel images
- refactoring
    tienday committed Jan 20, 2024
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  2. Merge branch 'feature/microscope/nikon' into feature/microscope/olympus

    tienday committed Jan 20, 2024
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Commits on Jan 22, 2024

  1. Merge pull request #275 from arayabrain/feature/microscope/nikon 

    update nd2reader
    @itutu-tienday
    itutu-tienday authored Jan 22, 2024
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Commits on Jan 23, 2024

  1. update nd2 lab_specific_metadata

    itutu-tienday committed Jan 23, 2024
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  2. Merge pull request #276 from arayabrain/feature/microscope/nikon 

    update nd2 lab_specific_metadata
    @itutu-tienday
    itutu-tienday authored Jan 23, 2024
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  3. Merge branch 'feature/microscope/main' into feature/microscope/olympus

    itutu-tienday committed Jan 23, 2024
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  4. arrow 1d data from hdf5

    @ReiHashimoto
    ReiHashimoto committed Jan 23, 2024
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Commits on Jan 24, 2024

  1. Merge pull request #277 from arayabrain/feature/fix-hdf-node 

    arrow 1d data from hdf5
    @ReiHashimoto
    ReiHashimoto authored Jan 24, 2024
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Commits on Jan 25, 2024

  1. support save raw image to nwb

    @quanpython
    quanpython committed Jan 25, 2024
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Commits on Jan 29, 2024

  1. Merge branch 'develop-main' into feature/microscope/main

    itutu-tienday committed Jan 29, 2024
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  2. Merge branch 'feature/microscope/main' into feature/microscope/olympus

    itutu-tienday committed Jan 29, 2024
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  3. update .codespellignore

    itutu-tienday committed Jan 29, 2024
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  4. add .codespellignore setting

    itutu-tienday committed Jan 29, 2024
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  5. oir reader module initial commit

    itutu-tienday committed Jan 29, 2024
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Commits on Jan 30, 2024

  1. add spiking activity datatype for spike_deconv

    @ReiHashimoto
    ReiHashimoto committed Jan 30, 2024
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  2. Merge pull request #280 from arayabrain/feature/rename-fluo-data 

    spiking activity datatype
    @ReiHashimoto
    ReiHashimoto authored Jan 30, 2024
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  3. Implement required functionality (needs refactoring)

    itutu-tienday committed Jan 30, 2024
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  4. refactor olympus modules

    itutu-tienday committed Jan 30, 2024
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  5. refactor olympus modules

    itutu-tienday committed Jan 30, 2024
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  6. refactor olympus metadata reader

    itutu-tienday committed Jan 30, 2024
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  7. refactor olympus image stack reader

    itutu-tienday committed Jan 30, 2024
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Commits on Jan 31, 2024

  1. refactor microscopes modules throughout 

    - Organize processing sequence (initialization to termination)
- Organize naming conventions
    itutu-tienday committed Jan 31, 2024
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  2. Merge pull request #279 from arayabrain/feature/save_raw_image_to_nwb 

    Support save raw image to nwb
    @ReiHashimoto
    ReiHashimoto authored Jan 31, 2024
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Commits on Feb 1, 2024

  1. Merge pull request #281 from arayabrain/feature/microscope/olympus 

    create Olympus oir reader module
    @itutu-tienday
    itutu-tienday authored Feb 1, 2024
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  2. enhance exception handling

    tienday committed Feb 1, 2024
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  3. expand OME metadata

    tienday committed Feb 1, 2024
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Commits on Feb 2, 2024

  1. Merge pull request #283 from arayabrain/feature/microscope/main 

    Merge microscope format modules
    @itutu-tienday
    itutu-tienday authored Feb 2, 2024
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Commits on Feb 6, 2024

  1. apply minor refactoring and bugfix

    itutu-tienday committed Feb 6, 2024
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  2. Merge branch 'feature/microscope/develop' into feature/microscope/tho… 

    …rlabs
    tienday committed Feb 6, 2024
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Commits on Feb 7, 2024

  1. add thorlabs image reader

    itutu-tienday committed Feb 7, 2024
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Commits on Feb 8, 2024

  1. Merge pull request #288 from arayabrain/feature/microscope/develop 

    apply minor refactoring and bugfix
    @itutu-tienday
    itutu-tienday authored Feb 8, 2024
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Commits on Feb 14, 2024

  1. add node to visualize fluo from hdf5

    @ReiHashimoto
    ReiHashimoto committed Feb 14, 2024
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  2. transpose nwb fluo data of suite2p

    @ReiHashimoto
    ReiHashimoto committed Feb 14, 2024
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  3. microscopes: add OMEDataModel fields

    itutu-tienday committed Feb 14, 2024
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  4. Merge branch 'feature/microscope/develop' into feature/microscope/tho… 

    …rlabs
    tienday committed Feb 14, 2024
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  5. microscope: support for processing thorlabs raw archive file

    itutu-tienday committed Feb 14, 2024
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  6. Merge pull request #287 from arayabrain/feature/microscope/thorlabs 

    Create Thorlabs image reader module
    @itutu-tienday
    itutu-tienday authored Feb 14, 2024
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  7. microscopes: remove unnecessary code

    itutu-tienday committed Feb 14, 2024
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  8. add node to visualize roi from hdf5

    @ReiHashimoto
    ReiHashimoto committed Feb 14, 2024
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  9. show cell_roi and non_cell_roi with iscell input

    @ReiHashimoto
    ReiHashimoto committed Feb 14, 2024
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  10. transpose fluo data

    @ReiHashimoto
    ReiHashimoto committed Feb 14, 2024
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Commits on Feb 15, 2024

  1. update pytest config

    itutu-tienday committed Feb 15, 2024
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  2. update pytest config

    itutu-tienday committed Feb 15, 2024
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  3. fix test path specifications

    @ReiHashimoto
    ReiHashimoto committed Feb 15, 2024
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  4. Merge pull request #293 from arayabrain/feature/update-pytest-config 

    update pytest config
    @itutu-tienday
    itutu-tienday authored Feb 15, 2024
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  5. Merge branch 'develop-main' into feature/microscope/develop

    itutu-tienday committed Feb 15, 2024
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  6. Merge pull request #292 from arayabrain/feature/visualize-hdf5-data 

    visualize FluoData and RoiData from hdf5 data
    @ReiHashimoto
    ReiHashimoto authored Feb 15, 2024
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  7. Merge branch 'develop-main' into feature/microscope/develop

    tienday committed Feb 15, 2024
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  8. Merge pull request #291 from arayabrain/feature/microscope/develop 

    Update microscopes module
    @itutu-tienday
    itutu-tienday authored Feb 15, 2024
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Commits on Feb 20, 2024

  1. added caiman advanced parameters

    itutu-tienday committed Feb 20, 2024
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  2. fix typo

    itutu-tienday committed Feb 20, 2024
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Commits on Feb 22, 2024

  1. caiman: refactor params config

    itutu-tienday committed Feb 22, 2024
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  2. fix linter warning

    itutu-tienday committed Feb 22, 2024
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Commits on Feb 27, 2024

  1. fix split

    @sanglevinh
    sanglevinh committed Feb 27, 2024
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  2. update poetry.lock

    @quanpython
    quanpython committed Feb 27, 2024
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  3. disable button output when not data

    @sanglevinh
    sanglevinh committed Feb 27, 2024
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  4. fix base url

    @sanglevinh
    sanglevinh committed Feb 27, 2024
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  5. update poetry.lock

    @quanpython @sanglevinh
    quanpython authored and sanglevinh committed Feb 27, 2024
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Commits on Feb 28, 2024

  1. disable button output when status error

    @sanglevinh
    sanglevinh committed Feb 28, 2024
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Commits on Feb 29, 2024

  1. Merge pull request #308 from arayabrain/feature/fix_output 

    disable button output when not data
    @itutu-tienday
    itutu-tienday authored Feb 29, 2024
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  2. Merge pull request #307 from arayabrain/feature/fix_split 

    fix split
    @itutu-tienday
    itutu-tienday authored Feb 29, 2024
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  3. microscopes: modify modules paths

    itutu-tienday committed Feb 29, 2024
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  4. apply linter

    itutu-tienday committed Feb 29, 2024
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Commits on Mar 1, 2024

  1. microscope: support inscopix oss isx module properties

    itutu-tienday committed Mar 1, 2024
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  2. fix oss isx module image reading

    itutu-tienday committed Mar 1, 2024
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Commits on Mar 2, 2024

  1. add scanner_settings module for OIRReader

    itutu-tienday committed Mar 2, 2024
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Commits on Mar 4, 2024

  1. Merge pull request #311 from arayabrain/feature/microscope/develop 

    Refactor microscope modules
    @itutu-tienday
    itutu-tienday authored Mar 4, 2024
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  2. Merge branch 'develop-main' into feature/caiman-additional-params

    tienday committed Mar 4, 2024
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  3. update caiman params yaml format

    tienday committed Mar 4, 2024
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Commits on Mar 5, 2024

  1. Merge pull request #300 from arayabrain/feature/caiman-additional-params 

    added caiman advanced parameters
    @itutu-tienday
    itutu-tienday authored Mar 5, 2024
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  2. microscope) minor modifications to test code

    tienday committed Mar 5, 2024
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  3. microscope) thorlabs: support zip archives containing subdirectories

    tienday committed Mar 5, 2024
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  4. microscope) adjust the calculation of each microscopes framerate

    tienday committed Mar 5, 2024
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Commits on Mar 8, 2024

  1. microscopes) Improve validation

    itutu-tienday committed Mar 8, 2024
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  2. microscopes) refactor test code 

    add process flags
    itutu-tienday committed Mar 8, 2024
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Commits on Mar 9, 2024

  1. Fix IDA_PARAM_ELEMENT value type

    itutu-tienday committed Mar 9, 2024
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  2. microscopes) ND2Reader 4D data support

    tienday committed Mar 9, 2024
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  3. bugfix) fixed variable reference flaws

    tienday committed Mar 9, 2024
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  4. microscopes) OIRReader 4D data support

    tienday committed Mar 9, 2024
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Commits on Mar 11, 2024

  1. refactor NDReader: refactor ndarray manipulation

    itutu-tienday committed Mar 11, 2024
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  2. microscopes) unify image data format to ndarray

    itutu-tienday committed Mar 11, 2024
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  3. Merge pull request #313 from arayabrain/feature/microscope/4d-support 

    Microscope Reader Module 4D data support
    @itutu-tienday
    itutu-tienday authored Mar 11, 2024
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  4. Merge pull request #312 from arayabrain/feature/microscope/develop 

    Refactor microscope modules
    @itutu-tienday
    itutu-tienday authored Mar 11, 2024
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Commits on Mar 12, 2024

  1. microscopes) update metadata field name (imaging_rate)

    itutu-tienday committed Mar 12, 2024
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  2. Merge pull request #314 from arayabrain/feature/microscope/develop 

    microscopes) update metadata field name (imaging_rate)
    @itutu-tienday
    itutu-tienday authored Mar 12, 2024
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Commits on Mar 22, 2024

  1. update docker compose yml (build-fe)

    itutu-tienday committed Mar 22, 2024
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Commits on Mar 24, 2024

  1. Merge pull request #315 from arayabrain/feature/update-docker-compose… 

    …-yml

deFeature/update docker compose yml
    @ReiHashimoto
    ReiHashimoto authored Mar 24, 2024
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Commits on Mar 26, 2024

  1. fix noncell shows background

    @ReiHashimoto
    ReiHashimoto committed Mar 26, 2024
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  2. Merge pull request #316 from arayabrain/feature/fix-bg-to-noncell 

    fix noncell shows background
    @ReiHashimoto
    ReiHashimoto authored Mar 26, 2024
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  3. implement microscope data reader nodes

    @ReiHashimoto
    ReiHashimoto committed Mar 26, 2024
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  4. Merge pull request #317 from arayabrain/feature/microscope-node 

    implement microscope data reader nodes
    @ReiHashimoto
    ReiHashimoto authored Mar 26, 2024
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  5. Merge pull request #626 from arayabrain/develop-main 

    Prepare for ver 1.2.0 release
    @ReiHashimoto
    ReiHashimoto authored Mar 26, 2024
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Commits on Mar 27, 2024

  1. specify black version

    @ReiHashimoto
    ReiHashimoto committed Mar 27, 2024
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  2. set microscope data into nwb input section

    @ReiHashimoto
    ReiHashimoto committed Mar 27, 2024
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  3. Merge pull request #318 from arayabrain/feature/fix-microscope-input-nwb 

    fix microscope input nwb
    @ReiHashimoto
    ReiHashimoto authored Mar 27, 2024
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  4. rename csv header label

    @ReiHashimoto
    ReiHashimoto committed Mar 27, 2024
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  5. Merge pull request #319 from arayabrain/feature/rename-csv-header 

    rename csv header label
    @ReiHashimoto
    ReiHashimoto authored Mar 27, 2024
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  6. add cnmf quality params

    @ReiHashimoto
    ReiHashimoto committed Mar 27, 2024
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  7. update docs for v1.2

    @ReiHashimoto
    ReiHashimoto committed Mar 27, 2024
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  8. Merge pull request #321 from arayabrain/feature/update-docs 

    update docs for v1.2
    @ReiHashimoto
    ReiHashimoto authored Mar 27, 2024
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  9. Merge pull request #627 from arayabrain/develop-main 

    fix issues on release check and update docs
    @ReiHashimoto
    ReiHashimoto authored Mar 27, 2024
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  10. Merge pull request #320 from arayabrain/feature/cnmf-quality-params 

    add cnmf quality params
    @ReiHashimoto
    ReiHashimoto authored Mar 27, 2024
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  11. Merge pull request #628 from arayabrain/develop-main 

    add cnmf quality params
    @ReiHashimoto
    ReiHashimoto authored Mar 27, 2024
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  12. update microscope lib settings

    @ReiHashimoto
    ReiHashimoto committed Mar 27, 2024
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  13. check .env file existance

    @ReiHashimoto
    ReiHashimoto committed Mar 27, 2024
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  14. fix typo

    @ReiHashimoto
    ReiHashimoto committed Mar 27, 2024
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Commits on Mar 28, 2024

  1. Merge pull request #322 from arayabrain/feature/fix-microscope-env 

    Feature/fix microscope env
    @ReiHashimoto
    ReiHashimoto authored Mar 28, 2024
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  2. Merge pull request #629 from arayabrain/develop-main 

    fix microscope reader settings
    @ReiHashimoto
    ReiHashimoto authored Mar 28, 2024
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  3. build for release 1.2.0

    @ReiHashimoto
    ReiHashimoto committed Mar 28, 2024
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  4. Merge pull request #630 from oist/release/1.2.0 

    build for release 1.2.0
    @ReiHashimoto
    ReiHashimoto authored Mar 28, 2024
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