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One Codex

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  1. rust-bfield rust-bfield Public

    B-field implementation in Rust

    Rust 205 4

  2. needletail needletail Public

    Fast FASTX parsing and k-mer methods in Rust

    Rust 176 23

  3. finch-rs finch-rs Public

    A genomic minhashing implementation in Rust

    Rust 93 8

  4. taxonomy taxonomy Public

    Python and Rust library for loading, saving, and manipulating taxonomic trees

    Rust 36 3

  5. sars-cov-2 sars-cov-2 Public

    SARS-CoV-2 variant calling and consensus assembly pipeline

    Jupyter Notebook 25 6

  6. onecodex onecodex Public

    Command line interface and Python client library for the One Codex API

    Python 23 12

Repositories

Showing 10 of 61 repositories
  • taxonomy-time-machine Public

    NCBI Taxonomy History Browser

    onecodex/taxonomy-time-machine’s past year of commit activity
    Python 7 MIT 1 1 0 Updated Dec 13, 2024
  • needletail Public

    Fast FASTX parsing and k-mer methods in Rust

    onecodex/needletail’s past year of commit activity
    Rust 176 MIT 23 13 1 Updated Dec 4, 2024
  • onecodex Public

    Command line interface and Python client library for the One Codex API

    onecodex/onecodex’s past year of commit activity
    Python 23 MIT 12 28 2 Updated Dec 3, 2024
  • docker-onecodex-notebook Public

    Docker image with a Jupyter notebook environment for embedded use on One Codex

    onecodex/docker-onecodex-notebook’s past year of commit activity
    HTML 2 MIT 1 3 2 Updated Dec 3, 2024
  • taxonomy Public

    Python and Rust library for loading, saving, and manipulating taxonomic trees

    onecodex/taxonomy’s past year of commit activity
    Rust 36 MIT 3 9 0 Updated Nov 1, 2024
  • rust-bfield Public

    B-field implementation in Rust

    onecodex/rust-bfield’s past year of commit activity
    Rust 205 Apache-2.0 4 4 0 Updated May 23, 2024
  • finch-rs Public

    A genomic minhashing implementation in Rust

    onecodex/finch-rs’s past year of commit activity
    Rust 93 MIT 8 15 2 Updated Jan 15, 2024
  • chrononaut Public

    A history mixin with audit logging, record locking, and time travel for FlaskSQLAlchemy

    onecodex/chrononaut’s past year of commit activity
    Python 18 MIT 4 3 2 Updated Jan 8, 2024
  • mmap-bitvec Public

    Rust implementation of a mmap-based bit vector

    onecodex/mmap-bitvec’s past year of commit activity
    Rust 6 MIT 0 4 0 Updated Oct 6, 2023
  • sars-cov-2 Public

    SARS-CoV-2 variant calling and consensus assembly pipeline

    onecodex/sars-cov-2’s past year of commit activity
    Jupyter Notebook 25 MIT 6 1 1 Updated Sep 18, 2023
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