Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Ideas for improvements #1

Open
mmslindner opened this issue Dec 13, 2024 · 0 comments
Open

Ideas for improvements #1

mmslindner opened this issue Dec 13, 2024 · 0 comments

Comments

@mmslindner
Copy link

Thanks for creating that great tool, it's really insightful to follow the evolution of the taxonomy.

There are two edge cases that are currently not captured yet in the time machine:

  1. Deprecated taxon ids. For example, BK polyomavirus (tid: 10629) has been deprecated a while ago, but this information is not shown anywhere. A plus would be if you could link to taxa that are supposed to replace those deprecated taxa (Betapolyomavirus hominis (tid: 1891762) for BK polyomavirus)
  2. Show synonyms. Sometimes, species are represented by different taxon ids with synonymous names. One such example is Emmonsia parva and Blastomyces parvus. Sometimes, one of the synonyms is getting deprecated after a while (see above).

So far, I have only used the web interface. Maybe some of that is already available when working with the code directly?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant