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Test external datasets: updated test external mcool datasets for mESC…
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… Micro-c for multiple resolutions
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@agalitsyna
agalitsyna committed Jul 4, 2024
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8 changes: 4 additions & 4 deletions datasets/external_test_files.tsv
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Expand Up @@ -3,7 +3,7 @@ HFF_MicroC test.mcool e4a0fc25c8dc3d38e9065fd74c565dd1 https://osf.io/3h9js/down
hESC_MicroC test_hESC.mcool ac0e636605505fb76fac25fa08784d5b https://osf.io/3kdyj/download Micro-C data from human ES cells for two chromosomes (hg38) in a multi-resolution mcool format. Krietenstein et al. 2021 data.
HFF_CTCF_fc test_CTCF.bigWig 62429de974b5b4a379578cc85adc65a3 https://osf.io/w92u3/download ChIP-Seq fold change over input with CTCF antibodies in HFF cells (hg38). Downloaded from ENCODE ENCSR000DWQ, ENCFF761RHS.bigWig file
HFF_CTCF_binding test_CTCF.bed.gz 61ecfdfa821571a8e0ea362e8fd48f63 https://osf.io/c9pwe/download Binding sites called from CTCF ChIP-Seq peaks for HFF cells (hg38). Peaks are from ENCODE ENCSR000DWQ, ENCFF498QCT.bed file. The motifs are called with gimmemotifs (options --nreport 1 --cutoff 0), with JASPAR pwm MA0139.
mESC_dRad21_IAA dRAD21_IAA.mm10.mapq_30.mcool a68e4c57f15d2f0ba3b0bb9d7c4066a2 https://osf.io/wy2mh/download Micro-C data from mESC for three chromosomes (mm10) in a multi-resolution mcool format (Hsieh et al. 2022). dRad21 IAA treatment, degraded Rad21.
mESC_dRad21_UT dRAD21_UT.mm10.mapq_30.mcool 1028b3f9fce7d77c9dc73d5e6b77d078 https://osf.io/z83wv/download Micro-C data from mESC for three chromosomes (mm10) in a multi-resolution mcool format (Hsieh et al. 2022). dRad21 untreated (UT), control for Rad21 degradation.
mESC_dCTCF_IAA dCTCF_IAA.mm10.mapq_30.mcool 84fea965b341e0110df63bc06b7f1d77 https://osf.io/79qje/download Micro-C data from mESC for three chromosomes (mm10) in a multi-resolution mcool format (Hsieh et al. 2022). dCTCF IAA treatment, degraded CTCF.
mESC_dWapl_IAA dWAPL_IAA.mm10.mapq_30.mcool 1514422b821c0f96757e76e98a6507b5 https://osf.io/etdgf/download Micro-C data from mESC for three chromosomes (mm10) in a multi-resolution mcool format (Hsieh et al. 2022). dWapl IAA treatment, degraded Wapl.
mESC_dRAD21_IAA dRAD21_IAA.mm10.mapq_30.mcool 40087388c443aae19110fdf099738c06 https://osf.io/5xaut/download Micro-C data from mESC for three chromosomes (mm10) in a multi-resolution mcool format (Hsieh et al. 2022). dRad21 IAA treatment, degraded Rad21.
mESC_dRAD21_UT dRAD21_UT.mm10.mapq_30.mcool 2ff91a7def1a9dd3e1f9b62d89d579a7 https://osf.io/u75pd/download Micro-C data from mESC for three chromosomes (mm10) in a multi-resolution mcool format (Hsieh et al. 2022). dRad21 untreated (UT), control for Rad21 degradation.
mESC_dCTCF_IAA dCTCF_IAA.mm10.mapq_30.mcool 33ec02cafa9f1f31d2cbba227cf38cc6 https://osf.io/xwy9j/download Micro-C data from mESC for three chromosomes (mm10) in a multi-resolution mcool format (Hsieh et al. 2022). dCTCF IAA treatment, degraded CTCF.
mESC_dWAPL_IAA dWAPL_IAA.mm10.mapq_30.mcool 11088c9a6d10826a23a69807fc296005 https://osf.io/fk74t/download Micro-C data from mESC for three chromosomes (mm10) in a multi-resolution mcool format (Hsieh et al. 2022). dWapl IAA treatment, degraded Wapl.

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