workflow added

openproblems-bio · Aug 1, 2024 · 0b0f464 · 0b0f464
1 parent bf8ba9f
commit 0b0f464
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Showing 5 changed files with 10 additions and 7 deletions.
diff --git a/src/process_data/multiomics/format_data/config.vsh.yaml b/src/process_data/multiomics/format_data/config.vsh.yaml
@@ -1,8 +1,9 @@
 
 functionality:
-  name: multiome
+  name: format_data
+  namespace: "multiomics"
   info:
-    label: multiome
+    label: format_data
     summary: "Download multiome, splits to rna and atac and saves seperately."
   arguments:
     - name: --multiome_counts

diff --git a/...ata/multiomics/multiome_r/config.vsh.yaml → ...iomics/format_resources_r/config.vsh.yaml b/...ata/multiomics/multiome_r/config.vsh.yaml → ...iomics/format_resources_r/config.vsh.yaml
@@ -1,7 +1,8 @@
 functionality:
-  name: reformat_resources_r
+  name: format_resources_r
+  namespace: "multiomics"
   info:
-    label: reformat_resources_r
+    label: format_resources_r
     summary: "Converts data to format needed for R methods."
 
   arguments:

diff --git a/...ocess_data/multiomics/multiome_r/script.R → ...ta/multiomics/format_resources_r/script.R b/...ocess_data/multiomics/multiome_r/script.R → ...ta/multiomics/format_resources_r/script.R
diff --git a/src/process_data/multiomics/multiome_matrix/config.vsh.yaml b/src/process_data/multiomics/multiome_matrix/config.vsh.yaml
@@ -1,5 +1,6 @@
 functionality:
   name: multiome_matrix
+  namespace: "multiomics"
   info:
     label: multiome_matrix
     summary: "Converts data to format needed for R methods."

diff --git a/src/workflows/process_multiomics/config.vsh.yaml b/src/workflows/process_multiomics/config.vsh.yaml
@@ -29,9 +29,9 @@ functionality:
       path: main.nf
       entrypoint: run_wf
   dependencies:
-    - name: process_dataset/multiomics/format_data 
-    - name: process_dataset/multiomics/multiome_matrix
-    - name: process_dataset/multiomics/multiome_r 
+    - name: multiomics/format_data 
+    - name: multiomics/multiome_matrix
+    - name: multiomics/format_resources_r 
 platforms:
   - type: nextflow
     directives: