scglue test 4

openproblems-bio · Jul 25, 2024 · 17a7462 · 17a7462
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diff --git a/notebooks/eda.ipynb b/notebooks/eda.ipynb
@@ -0,0 +1,44 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import anndata as ad \n",
+    "bulk_adata = ad.read_h5ad('../resources/raw-data/perturbation_data.h5ad')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bulk_adata"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "py10",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.14"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/..._methods/positive_control/config.vsh.yaml → ...ethods/positive_control/config.novsh.yaml b/..._methods/positive_control/config.vsh.yaml → ...ethods/positive_control/config.novsh.yaml
diff --git a/src/methods/figr/config.vsh.yaml → src/methods/figr/config.novsh.yaml b/src/methods/figr/config.vsh.yaml → src/methods/figr/config.novsh.yaml
diff --git a/src/methods/scglue/config.novsh.yaml → src/methods/scglue/config.vsh.yaml b/src/methods/scglue/config.novsh.yaml → src/methods/scglue/config.vsh.yaml