Merge pull request #51 from openworm/development

To v0.7.12; fix for pynml plotting
openworm · Nov 10, 2023 · 8adf2e8 · 8adf2e8
2 parents c94491d + f82bcdd
commit 8adf2e8
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Showing 117 changed files with 119 additions and 118 deletions.
diff --git a/.github/workflows/non_omv.yml b/.github/workflows/non_omv.yml
@@ -2,9 +2,9 @@ name: Non OMV tests
 
 on:
   push:
-    branches: [ master, development, test* ]
+    branches: [ master, development, test*, ow* ]
   pull_request:
-    branches: [ master, development, test* ]
+    branches: [ master, development, test*, ow* ]
 
 jobs:
   build:

diff --git a/c302/__version__.py b/c302/__version__.py
@@ -1 +1 @@
-__version__ = '0.7.11'
+__version__ = '0.7.12'
diff --git a/c302/c302_utils.py b/c302/c302_utils.py
@@ -7,6 +7,7 @@
 import matplotlib.pyplot as plt
 import numpy as np
 from pyneuroml import pynml
+from pyneuroml import plot as pyneuroml_plot
 from owmeta_core.bundle import Bundle
 
 import c302
@@ -92,7 +93,7 @@ def generate_traces_plot(config,parameter_set,xvals,yvals,info,labels,save,save_
 
     file_name = 'traces_%s%s_%s_%s.png'%(('muscles' if muscles else 'neuron'),('' if voltage else '_activity'),config,parameter_set)
 
-    pynml.generate_plot(xvals,
+    pyneuroml_plot.generate_plot(xvals,
                         yvals,
                         info,
                         labels=labels,

diff --git a/examples/LEMS_c302_A_Full.xml b/examples/LEMS_c302_A_Full.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          All cells

diff --git a/examples/LEMS_c302_A_IClamp.xml b/examples/LEMS_c302_A_IClamp.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['ADAL', 'PVCL']

diff --git a/examples/LEMS_c302_A_Muscles.xml b/examples/LEMS_c302_A_Muscles.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR']

diff --git a/examples/LEMS_c302_A_Oscillator.xml b/examples/LEMS_c302_A_Oscillator.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR']

diff --git a/examples/LEMS_c302_A_Pharyngeal.xml b/examples/LEMS_c302_A_Pharyngeal.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR']

diff --git a/examples/LEMS_c302_A_Social.xml b/examples/LEMS_c302_A_Social.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR']

diff --git a/examples/LEMS_c302_A_Syns.xml b/examples/LEMS_c302_A_Syns.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2']

diff --git a/examples/LEMS_c302_B_Full.xml b/examples/LEMS_c302_B_Full.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          All cells

diff --git a/examples/LEMS_c302_B_IClamp.xml b/examples/LEMS_c302_B_IClamp.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['ADAL', 'PVCL']

diff --git a/examples/LEMS_c302_B_Muscles.xml b/examples/LEMS_c302_B_Muscles.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR']

diff --git a/examples/LEMS_c302_B_Oscillator.xml b/examples/LEMS_c302_B_Oscillator.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR']

diff --git a/examples/LEMS_c302_B_Pharyngeal.xml b/examples/LEMS_c302_B_Pharyngeal.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR']

diff --git a/examples/LEMS_c302_B_Social.xml b/examples/LEMS_c302_B_Social.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR']

diff --git a/examples/LEMS_c302_B_Syns.xml b/examples/LEMS_c302_B_Syns.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL']

diff --git a/examples/LEMS_c302_C0_Full.xml b/examples/LEMS_c302_C0_Full.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          All cells

diff --git a/examples/LEMS_c302_C0_IClamp.xml b/examples/LEMS_c302_C0_IClamp.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['ADAL', 'PVCL']

diff --git a/examples/LEMS_c302_C0_Muscles.xml b/examples/LEMS_c302_C0_Muscles.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR']

diff --git a/examples/LEMS_c302_C0_Oscillator.xml b/examples/LEMS_c302_C0_Oscillator.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR']

diff --git a/examples/LEMS_c302_C0_Pharyngeal.xml b/examples/LEMS_c302_C0_Pharyngeal.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR']

diff --git a/examples/LEMS_c302_C0_Social.xml b/examples/LEMS_c302_C0_Social.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR']

diff --git a/examples/LEMS_c302_C0_Syns.xml b/examples/LEMS_c302_C0_Syns.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL']

diff --git a/examples/LEMS_c302_C1_Full.xml b/examples/LEMS_c302_C1_Full.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          All cells

diff --git a/examples/LEMS_c302_C1_IClamp.xml b/examples/LEMS_c302_C1_IClamp.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['ADAL', 'PVCL']

diff --git a/examples/LEMS_c302_C1_Muscles.xml b/examples/LEMS_c302_C1_Muscles.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR']

diff --git a/examples/LEMS_c302_C1_Oscillator.xml b/examples/LEMS_c302_C1_Oscillator.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR']

diff --git a/examples/LEMS_c302_C1_Pharyngeal.xml b/examples/LEMS_c302_C1_Pharyngeal.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR']

diff --git a/examples/LEMS_c302_C1_Social.xml b/examples/LEMS_c302_C1_Social.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR']

diff --git a/examples/LEMS_c302_C1_Syns.xml b/examples/LEMS_c302_C1_Syns.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['URYDL', 'SMDDR', 'VD12', 'VB11', 'AS2', 'AIZL', 'ASHL']

diff --git a/examples/LEMS_c302_C2_FW.xml b/examples/LEMS_c302_C2_FW.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    UpdatedSpreadsheetDataReader2
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['AVBL', 'AVBR', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'VD1', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'VD10', 'VD11', 'VD12', 'VD13', 'VB1', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VB10', 'VB11', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6']

diff --git a/examples/LEMS_c302_C2_Full.xml b/examples/LEMS_c302_C2_Full.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          All cells

diff --git a/examples/LEMS_c302_C2_IClamp.xml b/examples/LEMS_c302_C2_IClamp.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['ADAL', 'PVCL']

diff --git a/examples/LEMS_c302_C2_Muscles.xml b/examples/LEMS_c302_C2_Muscles.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['AS1', 'AS10', 'AS11', 'AS2', 'AS3', 'AS4', 'AS5', 'AS6', 'AS7', 'AS8', 'AS9', 'AVFL', 'AVFR', 'AVKR', 'AVL', 'CEPVL', 'CEPVR', 'DA1', 'DA2', 'DA3', 'DA4', 'DA5', 'DA6', 'DA7', 'DA8', 'DA9', 'DB1', 'DB2', 'DB3', 'DB4', 'DB5', 'DB6', 'DB7', 'DD1', 'DD2', 'DD3', 'DD4', 'DD5', 'DD6', 'DVB', 'HSNL', 'HSNR', 'IL1DL', 'IL1DR', 'IL1L', 'IL1R', 'IL1VL', 'IL1VR', 'PDA', 'PDB', 'PVNL', 'PVNR', 'RID', 'RIML', 'RIMR', 'RIVL', 'RIVR', 'RMDDL', 'RMDDR', 'RMDL', 'RMDR', 'RMDVL', 'RMDVR', 'RMED', 'RMEL', 'RMER', 'RMEV', 'RMFL', 'RMGL', 'RMGR', 'RMHL', 'RMHR', 'SMBDL', 'SMBDR', 'SMBVL', 'SMBVR', 'SMDDL', 'SMDDR', 'SMDVL', 'SMDVR', 'URADL', 'URADR', 'URAVL', 'URAVR', 'VA1', 'VA10', 'VA11', 'VA12', 'VA2', 'VA3', 'VA4', 'VA5', 'VA6', 'VA7', 'VA8', 'VA9', 'VB1', 'VB10', 'VB11', 'VB2', 'VB3', 'VB4', 'VB5', 'VB6', 'VB7', 'VB8', 'VB9', 'VC1', 'VC2', 'VC3', 'VC4', 'VC5', 'VC6', 'VD1', 'VD10', 'VD11', 'VD12', 'VD13', 'VD2', 'VD3', 'VD4', 'VD5', 'VD6', 'VD7', 'VD8', 'VD9', 'AVAL', 'AVAR', 'AVBL', 'AVBR', 'AVDL', 'AVDR', 'PVCL', 'PVCR']

diff --git a/examples/LEMS_c302_C2_Oscillator.xml b/examples/LEMS_c302_C2_Oscillator.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['DB2', 'VB2', 'DD2', 'VD2', 'DB3', 'VB3', 'DD3', 'VD3', 'DA2', 'VA2', 'DA3', 'VA3', 'AVBL', 'AVBR']

diff --git a/examples/LEMS_c302_C2_Pharyngeal.xml b/examples/LEMS_c302_C2_Pharyngeal.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['M1', 'M2L', 'M2R', 'M3L', 'M3R', 'M4', 'M5', 'I1L', 'I1R', 'I2L', 'I2R', 'I3', 'I4', 'I5', 'I6', 'MI', 'NSML', 'NSMR', 'MCL', 'MCR']

diff --git a/examples/LEMS_c302_C2_Social.xml b/examples/LEMS_c302_C2_Social.xml
@@ -6,7 +6,7 @@
 Parameters and setting used to generate this network:
 
     Data reader:                    SpreadsheetDataReader
-    c302 version:                   0.7.11
+    c302 version:                   0.7.12
     owmeta version:                 0.12.3
     owmeta_core version:            0.13.5
     Cells:                          ['RMGR', 'ASHR', 'ASKR', 'AWBR', 'IL2R', 'RMHR', 'URXR']