Repositories list

• Myeloid-Glioma

  Public
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•4•1•0•Updated Sep 17, 2024Sep 17, 2024

• IDH_mutant_gliomas_progression_2024

  Public
  R

  •1•2•0•0•Updated Aug 28, 2024Aug 28, 2024

• targetedNOMe_2022

  Public
  R

  •0•9•1•0•Updated Jul 19, 2024Jul 19, 2024

• Calculate_Myeloid_cNMF_Usage

  Public
  This tool receives a normalized h5ad matrix of myeloid cells and calculates the usage of the consensus myeloid cNMF programs in gliomas by the cells in the uploaded h5ad matrix.

  Python

  •1•0•0•0•Updated Jun 3, 2024Jun 3, 2024

• BE_CD69_paper_2022

  Public
  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Dec 21, 2023Dec 21, 2023

• XRBS_wdl

  Public
  R

  •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023

• XRBS_SE

  Public
  R

  •0•0•0•0•Updated May 23, 2023May 23, 2023

• methods_mdm2_sarcoma

  Public
  Bioinformatics pipelines developed at the Bernstein lab for the analyses of RNA-Seq, ChIP-Seq and hiChIP datasets in the article "Regulatory targets and impact of supraphysiologic MDM2 in sarcoma"

  R

  •0•0•0•0•Updated Apr 10, 2023Apr 10, 2023

• aml2019

  Public
  The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute myeloid leukemia (AML).

  R

  •

  MIT License

  •12•36•3•0•Updated Apr 8, 2020Apr 8, 2020