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    11 repositories

    • proteoformer

      Public
      Integration ribosome profiling - mass spectrometry
      Python
      •
      GNU General Public License v3.0
      •8•14•2•0•Updated Dec 16, 2024Dec 16, 2024

    • BIOCLOCK

      Public
      Code used for the BIOCLOCK pilot study.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • maelstRom

      Public
      R
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • DeepRibo

      Public
      Python
      •
      GNU General Public License v3.0
      •4•14•1•0•Updated Feb 27, 2023Feb 27, 2023

    • mQC

      Public
      Ribosome profiling mapping quality control tool
      pythonquality-controlmappingperlribosome-profilingpyplotribosomemappingqcmqc
      Python
      •
      GNU General Public License v3.0
      •2•6•1•0•Updated Apr 20, 2021Apr 20, 2021

    • proBAMconvert

      Public
      proBAMconvert, a conversion tool for peptide identification files (MzIdentML,pepXML,mzTAB) to the proBAM format
      Python
      •4•0•1•1•Updated Mar 30, 2021Mar 30, 2021

    • REPARATION

      Public
      Perl
      •
      GNU General Public License v3.0
      •5•1•0•0•Updated Dec 4, 2020Dec 4, 2020

    • MAGE_preprocessing

      Public
      Python
      •0•0•0•0•Updated Sep 3, 2019Sep 3, 2019

    • mQC_galaxy

      Public
      Repo for the files needed for embedding mappingQC in the Galaxy environment
      wrapperquality-controlgalaxyribosome-profilingmappingqcmqc
      HTML
      •0•0•0•0•Updated Mar 8, 2018Mar 8, 2018

    • RiboZINB

      Public
      RiboZinB: A tool to identifying actively translated isoform(s) from ribosome profiling data.
      Perl
      •
      Other
      •1•0•0•0•Updated Feb 8, 2018Feb 8, 2018

    • Bacteria-ORFs

      Public
      Perl
      •0•0•0•0•Updated Oct 4, 2017Oct 4, 2017