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    50 repositories

    • DynamicObj

      Public
      F# library supporting Dynamic Objects including inheritance in functional style
      F#
      •
      MIT License
      •4•16•6•0•Updated Dec 19, 2024Dec 19, 2024

    • csbiology.github.io

      Public
      Website for teaching, publications and news from CSB (Computational Systems Biology)
      CSS
      •
      MIT License
      •2•2•5•0•Updated Dec 17, 2024Dec 17, 2024

    • ProteomIQon

      Public
      F#
      •
      MIT License
      •5•12•1•0•Updated Dec 10, 2024Dec 10, 2024

    • OBO.NET

      Public
      An OBO file format parser, written in F#.
      F#
      •
      MIT License
      •1•3•8•0•Updated Oct 30, 2024Oct 30, 2024

    • YAMLicious

      Public
      F#
      •0•4•3•0•Updated Oct 14, 2024Oct 14, 2024

    • .github

      Public
      CSBiology gh organization repo (+discussions)
      0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • FSharpAux

      Public
      Auxiliary functions and data structures for the F# programming language
      fsharpfablefable-librariesfable-javascript
      F#
      •
      MIT License
      •16•25•7•5•Updated Jul 14, 2024Jul 14, 2024

    • ChlamyAtlas

      Public
      Chlamy Atlas is a AI-powered web application which predicts the localizations of proteins from the Green Algae Chlamydomonas reinhardtii.
      sciencedata-sciencetoolmltargetplantchlamydomonas
      F#
      •0•0•1•0•Updated May 29, 2024May 29, 2024

    • BioFSharp

      Public
      Open source bioinformatics and computational biology toolbox written in F#.
      dockerbioinformaticsfsharpbiologydatasciencebiostatisticsamino-acidsbiocontainersbioinformatics-containersnucleotides
      F#
      •
      MIT License
      •32•110•34•2•Updated May 14, 2024May 14, 2024

    • MzIO

      Public
      Generic data model to unify various readers and writers for different formats used in protein mass spectrometry
      F#
      •
      MIT License
      •4•8•2•7•Updated May 7, 2024May 7, 2024

    • BioInfoIntro

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • FsDocker

      Public
      F# Client for Docker Remote API based on Docker.DotNet Project
      F#
      •
      The Unlicense
      •1•5•0•0•Updated Mar 31, 2024Mar 31, 2024

    • BIO-BTE-06-L-7

      Public
      Notebooks, scripts and guides for the computational section of VM 1/ VM 2: Practical class - Molecular Biotechnology II (BIO-BTE-06-L-7)
      Jupyter Notebook
      •
      MIT License
      •1•4•7•0•Updated Mar 13, 2024Mar 13, 2024

    • deepStabP

      Public
      A small web ui and python api service to predict protein melting point temperatures.
      F#
      •
      MIT License
      •0•13•0•0•Updated Feb 1, 2024Feb 1, 2024

    • Slurmi

      Public
      F#
      •
      MIT License
      •0•3•2•0•Updated Jan 16, 2024Jan 16, 2024

    • iMLP

      Public
      codebase and dotnet CLI tool for prediction of iMTS-Ls
      F#
      •
      MIT License
      •1•3•0•0•Updated Jan 15, 2024Jan 15, 2024

    • BIO-BTE-10-L-4

      Public
      Project suggestions for the project work for Wissenschaftliche Programmierung für Biolog*innen (BIO-BTE-10-L-4)
      MIT License
      •3•1•3•0•Updated Nov 2, 2023Nov 2, 2023

    • TempClass

      Public
      Package for fitting and classification of short and noisy time series using constrained smoothing splines.
      F#
      •
      MIT License
      •0•1•0•0•Updated Oct 25, 2023Oct 25, 2023

    • CSBlog

      Public
      The blog about all things CSB
      HTML
      •
      MIT License
      •10•10•2•1•Updated Oct 20, 2023Oct 20, 2023

    • FSharp.FGL

      Public
      Functional graph library for F#
      functional-graphfsharpgraph
      F#
      •
      MIT License
      •11•61•9•0•Updated May 19, 2023May 19, 2023

    • OntologyEnrichment

      Public
      Command line tool to perform functional annotation and ontology enrichments for Chlamydomonas and Arabidopsis
      F#
      •
      MIT License
      •0•0•2•0•Updated Mar 15, 2023Mar 15, 2023

    • iMLP_Web

      Public
      codebase of our webservice for prediction of iMTS-Ls
      SCSS
      •0•2•4•2•Updated Mar 14, 2023Mar 14, 2023

    • FsOntology

      Public
      A toolkit for working with ontology data structures in .NET
      F#
      •
      MIT License
      •0•0•0•0•Updated Feb 24, 2023Feb 24, 2023

    • TMEA

      Public
      Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.
      bioinformaticsplotlyf-sharpbiostatisticsgenesgseaenrichment-scoredeedle
      F#
      •
      MIT License
      •3•8•7•1•Updated Jan 3, 2023Jan 3, 2023

    • BioFSharp.Mz

      Public
      BioFSharp.Mz - modular computational proteomics
      F#
      •
      MIT License
      •5•13•2•1•Updated Dec 8, 2022Dec 8, 2022

    • BIO-MBP-06-U-2

      Public
      Notebooks for the practical course
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Sep 2, 2022Sep 2, 2022

    • FsODE

      Public
      Ordinary Differential Equation (ODE) Models in F#
      C#
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Aug 29, 2022Aug 29, 2022

    • LitXml

      Public
      Small FSharp based DSL for writing literal xml
      F#
      •
      MIT License
      •0•6•0•0•Updated Jun 15, 2022Jun 15, 2022

    • BioFSharp.Vis

      Public
      Data visualization for bioinformatic purposes, containing for instance Venn and Chord diagramms
      F#
      •
      MIT License
      •1•3•2•0•Updated May 16, 2022May 16, 2022

    • Drafo

      Public
      F#
      •1•2•0•0•Updated Apr 13, 2022Apr 13, 2022