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@GTK-lab Greg Tucker-Kellogg lab at NUS

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    25 repositories

    • nus-thesis-latex-template

      Public
      A LaTeX template for NUS Masters/PhD theses
      TeX
      •
      MIT License
      •12•1•0•0•Updated Sep 29, 2024Sep 29, 2024

    • mala

      Public
      R
      •
      Other
      •0•0•0•0•Updated Aug 3, 2024Aug 3, 2024

    • SpliCeAT

      Public
      R
      •2•1•0•0•Updated May 9, 2024May 9, 2024

    • cutandrun

      Public
      Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
      Nextflow
      •
      MIT License
      •48•0•0•0•Updated May 9, 2024May 9, 2024

    • spladder

      Public
      Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
      Python
      •
      Other
      •33•1•0•0•Updated Apr 23, 2024Apr 23, 2024

    • nus-fyp

      Public
      A LaTeX template for NUS Final Year Project reports/theses
      TeX
      •
      MIT License
      •12•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • rna_draw

      Public
      Python
      •2•0•0•0•Updated May 19, 2023May 19, 2023

    • rnaseq

      Public
      RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
      Nextflow
      •
      MIT License
      •709•0•0•0•Updated Jul 18, 2022Jul 18, 2022

    • nextflow

      Public
      A DSL for data-driven computational pipelines
      Groovy
      •
      Apache License 2.0
      •634•0•0•0•Updated May 25, 2022May 25, 2022

    • nextflow-awsbatch

      Public
      Nextflow
      •0•0•0•0•Updated Mar 29, 2022Mar 29, 2022

    • DEXSeq

      Public
      R
      •0•0•0•0•Updated Jul 19, 2021Jul 19, 2021

    • bioicons

      Public
      A library of free open source icons for science illustrations in biology and chemistry
      Vue
      •
      MIT License
      •77•0•0•0•Updated May 5, 2021May 5, 2021

    • LoqsPD

      Public
      Repository for input and Snakefiles
      R
      •0•0•0•0•Updated Jan 7, 2020Jan 7, 2020

    • CrypSplice

      Public
      This is modified from http://www.liuzlab.org/CrypSplice/ under the GPL 3.0
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 8, 2019Nov 8, 2019

    • modalv

      Public
      R
      •1•1•0•0•Updated Jul 18, 2019Jul 18, 2019

    • styles

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Jan 18, 2019Jan 18, 2019

    • workshop-template

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 7, 2019Jan 7, 2019

    • koRpus

      Public
      An R Package for Text Analysis
      R
      •
      GNU General Public License v3.0
      •6•0•0•0•Updated Feb 14, 2018Feb 14, 2018

    • oligoplish

      Public
      R
      •0•0•0•0•Updated Jan 19, 2018Jan 19, 2018

    • bash

      Public
      LSM3241 material for bash script
      Python
      •
      Other
      •0•0•0•0•Updated Feb 17, 2017Feb 17, 2017

    • cetcolor

      Public
      CET Perceptually Uniform Colour Maps for R
      R
      •3•0•0•0•Updated Dec 2, 2016Dec 2, 2016

    • Pairwise-sequence-alignment

      Public
      Python
      •0•2•0•0•Updated Mar 5, 2016Mar 5, 2016

    • miREvo

      Public
      miRNA processing
      Perl
      •5•0•0•0•Updated Oct 1, 2015Oct 1, 2015

    • log.sh

      Public
      Logging library for Bash
      Shell
      •
      MIT License
      •6•0•0•0•Updated Jul 10, 2015Jul 10, 2015

    • NUS-Templates

      Public
      TeX
      •5•0•0•0•Updated Apr 4, 2014Apr 4, 2014