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    5 repositories

    • dengue-lineages-workflow

      Public
      This repository contains the source code for the datasets used in the implementation of the dengue lineage system in NextClade. The organizational workflow was developed based on the workflow created for the m-pox virus, available at: https://github.com/nextstrain/mpox/tree/master/nextclade."
      Python
      •0•3•0•0•Updated Sep 10, 2024Sep 10, 2024

    • ViperSubmit

      Public
      The SubmissionMode is a semi-automatic mode for handling and editing files for submission on the GISAID website.
      Python
      •0•0•0•0•Updated Jul 31, 2024Jul 31, 2024

    • viper

      Public
      VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumina sequencing data generated through genomic surveillance.
      Shell
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • DyDEVILS

      Public
      This repository contains the result of using a semi-automatic workflow for classifying Dengue virus (DENV) based on complete genome sequences. It addresses the current limitations in sub-genotype classification, offering a more granular and standardized system compared to traditional methods.
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jun 13, 2024Jun 13, 2024

    • CeVIVAS

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024