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    8 repositories

    • battenberg

      Public
      Battenberg R package for subclonal copynumber estimation
      R
      •
      GNU Affero General Public License v3.0
      •49•83•11•0•Updated Nov 13, 2024Nov 13, 2024

    • dpclust

      Public
      Dirichlet Process based methods for subclonal reconstruction of tumours
      R
      •
      GNU Affero General Public License v3.0
      •16•29•4•1•Updated Oct 4, 2024Oct 4, 2024

    • AmplificationTimeR

      Public
      Code for timing amplifications
      R
      •
      GNU General Public License v3.0
      •1•3•2•0•Updated Jun 6, 2024Jun 6, 2024

    • AmplificationTimeR_paper_archive

      Public archive
      A repository to store any code that was run as part of the AmplificationTimeR publication.
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • dpclust3p

      Public
      Dirichlet Process Clustering Pre-Processing Pipeline
      R
      •
      GNU Affero General Public License v3.0
      •10•9•7•0•Updated Jul 14, 2023Jul 14, 2023

    • PhaDPClust

      Public
      PhaDPClust
      R
      •0•0•0•0•Updated Nov 27, 2022Nov 27, 2022

    • InUtero_MPN

      Public archive
      Code accompanying 'In utero origin of myelofibrosis presenting in adult monozygotic twins' (Sousos, Ní Leathlobhair, et al., Nature Medicine, 2022). See https://www.nature.com/articles/s41591-022-01793-4
      R
      •0•1•0•0•Updated Aug 1, 2022Aug 1, 2022

    • dpclust_smchet_docker

      Public
      DPClust subclonal architecture calling Docker pipeline for SMC-het
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jul 4, 2017Jul 4, 2017