Repositories list

• hybrid-Lambda

  Public
  Hybrid-Lambda is a software package that can simulate gene trees within a rooted species network or a rooted species tree under the Kingman's coalescent or Lambda coalescent process.

  C++

  •

  GNU General Public License v3.0

  •4•6•12•0•Updated Apr 27, 2022Apr 27, 2022

• freq

  Public
  C++

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Dec 8, 2020Dec 8, 2020

• plot

  Public
  C++

  •

  GNU General Public License v3.0

  •1•0•2•0•Updated Dec 8, 2020Dec 8, 2020

• hybridLambda.github.io

  Public
  CSS

  •0•0•0•0•Updated Feb 10, 2019Feb 10, 2019

• hybrid-coal

  Public
  Hybrid-coal is used to compute gene tree probabilities given species network under coalescent process. We use a new representation of the species network likelihood that expresses the probability distribution of the gene tree topolgies as a linear combination of gene tree distributions given a set of species trees.

  C++

  •

  GNU General Public License v3.0

  •0•2•6•0•Updated Nov 1, 2016Nov 1, 2016

• graph

  Public
  C++

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 27, 2016Feb 27, 2016

• tree_topo

  Public
  C++

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 2, 2015Jul 2, 2015