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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,98 @@ | ||
| name: R | ||
| channels: | ||
| - r | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| - R | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=1_gnu | ||
| - _r-mutex=1.0.0=anacondar_1 | ||
| - binutils_impl_linux-64=2.35.1=h193b22a_2 | ||
| - binutils_linux-64=2.35=h67ddf6f_30 | ||
| - bwidget=1.9.14=ha770c72_0 | ||
| - bzip2=1.0.8=h7f98852_4 | ||
| - c-ares=1.17.1=h36c2ea0_0 | ||
| - ca-certificates=2020.12.5=ha878542_0 | ||
| - cairo=1.14.12=h80bd089_1005 | ||
| - curl=7.71.1=he644dc0_8 | ||
| - fontconfig=2.13.1=he4413a7_1000 | ||
| - freetype=2.10.4=h0708190_1 | ||
| - gcc_impl_linux-64=7.5.0=hda68d29_13 | ||
| - gcc_linux-64=7.5.0=h47867f9_30 | ||
| - gettext=0.19.8.1=hf34092f_1004 | ||
| - gfortran_impl_linux-64=7.5.0=h56cb351_18 | ||
| - gfortran_linux-64=7.5.0=h78c8a43_30 | ||
| - glib=2.56.2=had28632_1001 | ||
| - graphite2=1.3.13=h58526e2_1001 | ||
| - gxx_impl_linux-64=7.5.0=h64c220c_13 | ||
| - gxx_linux-64=7.5.0=h555fc39_30 | ||
| - harfbuzz=1.9.0=he243708_1001 | ||
| - icu=58.2=hf484d3e_1000 | ||
| - jpeg=9d=h36c2ea0_0 | ||
| - kernel-headers_linux-64=2.6.32=h77966d4_13 | ||
| - krb5=1.17.2=h926e7f8_0 | ||
| - ld_impl_linux-64=2.35.1=hea4e1c9_2 | ||
| - libcurl=7.71.1=hcdd3856_8 | ||
| - libedit=3.1.20191231=he28a2e2_2 | ||
| - libev=4.33=h516909a_1 | ||
| - libffi=3.2.1=he1b5a44_1007 | ||
| - libgcc-ng=9.3.0=h2828fa1_18 | ||
| - libgfortran-ng=7.5.0=h14aa051_18 | ||
| - libgfortran4=7.5.0=h14aa051_18 | ||
| - libgomp=9.3.0=h2828fa1_18 | ||
| - libiconv=1.16=h516909a_0 | ||
| - libnghttp2=1.43.0=h812cca2_0 | ||
| - libpng=1.6.37=h21135ba_2 | ||
| - libssh2=1.9.0=hab1572f_5 | ||
| - libstdcxx-ng=9.3.0=h6de172a_18 | ||
| - libtiff=4.2.0=hdc55705_0 | ||
| - libuuid=2.32.1=h7f98852_1000 | ||
| - libwebp-base=1.2.0=h7f98852_0 | ||
| - libxcb=1.13=h7f98852_1003 | ||
| - libxml2=2.9.9=h13577e0_2 | ||
| - lz4-c=1.9.3=h9c3ff4c_0 | ||
| - ncurses=6.2=h58526e2_4 | ||
| - openssl=1.1.1j=h7f98852_0 | ||
| - pango=1.40.14=hf0c64fd_1003 | ||
| - pcre=8.44=he1b5a44_0 | ||
| - pixman=0.34.0=h14c3975_1003 | ||
| - pthread-stubs=0.4=h36c2ea0_1001 | ||
| - r=3.4.3=r343_0 | ||
| - r-base=3.4.3=h9bb98a2_5 | ||
| - r-boot=1.3_20=r343h889e2dd_0 | ||
| - r-class=7.3_14=r343h086d26f_4 | ||
| - r-cluster=2.0.6=r343h4829c52_0 | ||
| - r-codetools=0.2_15=r343h889e2dd_0 | ||
| - r-foreign=0.8_69=r343h086d26f_0 | ||
| - r-kernsmooth=2.23_15=r343h4829c52_4 | ||
| - r-lattice=0.20_35=r343h086d26f_0 | ||
| - r-mass=7.3_48=r343h086d26f_0 | ||
| - r-matrix=1.2_12=r343h086d26f_0 | ||
| - r-mgcv=1.8_22=r343h086d26f_0 | ||
| - r-nlme=3.1_131=r343h4829c52_0 | ||
| - r-nnet=7.3_12=r343h086d26f_0 | ||
| - r-recommended=3.4.3=r343_0 | ||
| - r-rpart=4.1_11=r343h086d26f_0 | ||
| - r-spatial=7.3_11=r343h086d26f_4 | ||
| - r-survival=2.41_3=r343h086d26f_0 | ||
| - readline=7.0=hf8c457e_1001 | ||
| - sysroot_linux-64=2.12=h77966d4_13 | ||
| - tk=8.6.10=h21135ba_1 | ||
| - tktable=2.10=hb7b940f_3 | ||
| - xorg-kbproto=1.0.7=h7f98852_1002 | ||
| - xorg-libice=1.0.10=h516909a_0 | ||
| - xorg-libsm=1.2.3=h84519dc_1000 | ||
| - xorg-libx11=1.6.12=h516909a_0 | ||
| - xorg-libxau=1.0.9=h7f98852_0 | ||
| - xorg-libxdmcp=1.1.3=h7f98852_0 | ||
| - xorg-libxext=1.3.4=h516909a_0 | ||
| - xorg-libxrender=0.9.10=h516909a_1002 | ||
| - xorg-renderproto=0.11.1=h14c3975_1002 | ||
| - xorg-xextproto=7.3.0=h7f98852_1002 | ||
| - xorg-xproto=7.0.31=h7f98852_1007 | ||
| - xz=5.2.5=h516909a_1 | ||
| - zlib=1.2.11=h516909a_1010 | ||
| - zstd=1.4.8=ha95c52a_1 | ||
| prefix: /shelf/apps/pjt6/conda/envs/R |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,91 @@ | ||
| name: R332 | ||
| channels: | ||
| - r | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| - R | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=0_gnu | ||
| - _r-mutex=1.0.0=anacondar_1 | ||
| - binutils_impl_linux-64=2.33.1=h53a641e_8 | ||
| - binutils_linux-64=2.33.1=h9595d00_16 | ||
| - bwidget=1.9.14=0 | ||
| - bzip2=1.0.8=h516909a_2 | ||
| - ca-certificates=2019.11.28=hecc5488_0 | ||
| - cairo=1.14.12=h80bd089_1005 | ||
| - curl=7.68.0=hf8cf82a_0 | ||
| - fontconfig=2.13.1=he4413a7_1000 | ||
| - freetype=2.10.0=he983fc9_1 | ||
| - gcc_impl_linux-64=7.3.0=hd420e75_5 | ||
| - gcc_linux-64=7.3.0=h553295d_16 | ||
| - gettext=0.19.8.1=hc5be6a0_1002 | ||
| - gfortran_impl_linux-64=7.3.0=hdf63c60_5 | ||
| - gfortran_linux-64=7.3.0=h553295d_16 | ||
| - glib=2.56.2=had28632_1001 | ||
| - graphite2=1.3.13=hf484d3e_1000 | ||
| - gxx_impl_linux-64=7.3.0=hdf63c60_5 | ||
| - gxx_linux-64=7.3.0=h553295d_16 | ||
| - harfbuzz=1.9.0=he243708_1001 | ||
| - icu=58.2=hf484d3e_1000 | ||
| - jpeg=9c=h14c3975_1001 | ||
| - krb5=1.16.4=h2fd8d38_0 | ||
| - ld_impl_linux-64=2.33.1=h53a641e_8 | ||
| - libcurl=7.68.0=hda55be3_0 | ||
| - libedit=3.1.20170329=hf8c457e_1001 | ||
| - libffi=3.2.1=he1b5a44_1006 | ||
| - libgcc-ng=9.2.0=h24d8f2e_2 | ||
| - libgfortran-ng=7.3.0=hdf63c60_5 | ||
| - libgomp=9.2.0=h24d8f2e_2 | ||
| - libiconv=1.15=h516909a_1005 | ||
| - libpng=1.6.37=hed695b0_0 | ||
| - libssh2=1.8.2=h22169c7_2 | ||
| - libstdcxx-ng=9.2.0=hdf63c60_2 | ||
| - libtiff=4.1.0=hc3755c2_3 | ||
| - libuuid=2.32.1=h14c3975_1000 | ||
| - libxcb=1.13=h14c3975_1002 | ||
| - libxml2=2.9.9=h13577e0_2 | ||
| - lz4-c=1.8.3=he1b5a44_1001 | ||
| - ncurses=6.1=hf484d3e_1002 | ||
| - openssl=1.1.1d=h516909a_0 | ||
| - pango=1.40.14=hf0c64fd_1003 | ||
| - pcre=8.44=he1b5a44_0 | ||
| - pixman=0.34.0=h14c3975_1003 | ||
| - pthread-stubs=0.4=h14c3975_1001 | ||
| - r=3.4.3=r343_0 | ||
| - r-base=3.4.3=h9bb98a2_5 | ||
| - r-boot=1.3_20=r343h889e2dd_0 | ||
| - r-class=7.3_14=r343h086d26f_4 | ||
| - r-cluster=2.0.6=r343h4829c52_0 | ||
| - r-codetools=0.2_15=r343h889e2dd_0 | ||
| - r-foreign=0.8_69=r343h086d26f_0 | ||
| - r-kernsmooth=2.23_15=r343h4829c52_4 | ||
| - r-lattice=0.20_35=r343h086d26f_0 | ||
| - r-mass=7.3_48=r343h086d26f_0 | ||
| - r-matrix=1.2_12=r343h086d26f_0 | ||
| - r-mgcv=1.8_22=r343h086d26f_0 | ||
| - r-nlme=3.1_131=r343h4829c52_0 | ||
| - r-nnet=7.3_12=r343h086d26f_0 | ||
| - r-recommended=3.4.3=r343_0 | ||
| - r-rpart=4.1_11=r343h086d26f_0 | ||
| - r-spatial=7.3_11=r343h086d26f_4 | ||
| - r-survival=2.41_3=r343h086d26f_0 | ||
| - readline=7.0=hf8c457e_1001 | ||
| - tk=8.6.10=hed695b0_0 | ||
| - tktable=2.10=h555a92e_3 | ||
| - xorg-kbproto=1.0.7=h14c3975_1002 | ||
| - xorg-libice=1.0.10=h516909a_0 | ||
| - xorg-libsm=1.2.3=h84519dc_1000 | ||
| - xorg-libx11=1.6.9=h516909a_0 | ||
| - xorg-libxau=1.0.9=h14c3975_0 | ||
| - xorg-libxdmcp=1.1.3=h516909a_0 | ||
| - xorg-libxext=1.3.4=h516909a_0 | ||
| - xorg-libxrender=0.9.10=h516909a_1002 | ||
| - xorg-renderproto=0.11.1=h14c3975_1002 | ||
| - xorg-xextproto=7.3.0=h14c3975_1002 | ||
| - xorg-xproto=7.0.31=h14c3975_1007 | ||
| - xz=5.2.4=h14c3975_1001 | ||
| - zlib=1.2.11=h516909a_1006 | ||
| - zstd=1.4.4=h3b9ef0a_1 | ||
| prefix: /shelf/apps/pjt6/conda/envs/R332 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| name: TGSgapcloser | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| - R | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=1_gnu | ||
| - ca-certificates=2020.11.8=ha878542_0 | ||
| - certifi=2020.11.8=py39hf3d152e_0 | ||
| - k8=0.2.5=he513fc3_0 | ||
| - ld_impl_linux-64=2.35.1=hed1e6ac_0 | ||
| - libffi=3.3=h58526e2_1 | ||
| - libgcc-ng=9.3.0=h5dbcf3e_17 | ||
| - libgomp=9.3.0=h5dbcf3e_17 | ||
| - libstdcxx-ng=9.3.0=h2ae2ef3_17 | ||
| - minimap2=2.17=hed695b0_3 | ||
| - ncurses=6.2=h58526e2_4 | ||
| - openssl=1.1.1h=h516909a_0 | ||
| - pip=20.3=pyhd8ed1ab_0 | ||
| - python=3.9.0=hffdb5ce_5_cpython | ||
| - python_abi=3.9=1_cp39 | ||
| - racon=1.4.13=he513fc3_0 | ||
| - readline=8.0=he28a2e2_2 | ||
| - setuptools=49.6.0=py39h079e4ff_2 | ||
| - sqlite=3.34.0=h74cdb3f_0 | ||
| - tgsgapcloser=1.0.3=h8b12597_0 | ||
| - tk=8.6.10=hed695b0_1 | ||
| - tzdata=2020d=h516909a_0 | ||
| - wheel=0.36.0=pyhd3deb0d_0 | ||
| - xz=5.2.5=h516909a_1 | ||
| - zlib=1.2.11=h516909a_1010 | ||
| prefix: /shelf/apps/pjt6/conda/envs/TGSgapcloser |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,33 @@ | ||
| name: bam2fastx | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| - R | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=1_gnu | ||
| - bam2fastx=1.3.0=he1c1bb9_8 | ||
| - bzip2=1.0.8=h516909a_3 | ||
| - c-ares=1.11.0=h470a237_1 | ||
| - ca-certificates=2020.11.8=ha878542_0 | ||
| - curl=7.71.1=he644dc0_8 | ||
| - htslib=1.9=h4da6232_3 | ||
| - krb5=1.17.1=hfafb76e_3 | ||
| - libcurl=7.71.1=hcdd3856_8 | ||
| - libdeflate=1.2=h516909a_1 | ||
| - libedit=3.1.20191231=he28a2e2_2 | ||
| - libev=4.33=h516909a_1 | ||
| - libgcc-ng=9.3.0=h5dbcf3e_17 | ||
| - libgomp=9.3.0=h5dbcf3e_17 | ||
| - libnghttp2=1.41.0=hab1572f_1 | ||
| - libssh2=1.9.0=hab1572f_5 | ||
| - libstdcxx-ng=9.3.0=h2ae2ef3_17 | ||
| - ncurses=6.2=h58526e2_3 | ||
| - openssl=1.1.1h=h516909a_0 | ||
| - pbbam=1.0.6=hc16d5b3_1 | ||
| - pbcopper=1.3.0=h3e4de3e_0 | ||
| - tk=8.6.10=hed695b0_1 | ||
| - xz=5.2.5=h516909a_1 | ||
| - zlib=1.2.11=h516909a_1010 | ||
| prefix: /shelf/apps/pjt6/conda/envs/bam2fastx |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,63 @@ | ||
| name: base | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| - R | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=0_gnu | ||
| - bzip2=1.0.8=h516909a_2 | ||
| - ca-certificates=2020.4.5.1=hecc5488_0 | ||
| - certifi=2020.4.5.1=py37hc8dfbb8_0 | ||
| - cffi=1.13.2=py37h8022711_0 | ||
| - chardet=3.0.4=py37_1003 | ||
| - conda=4.8.3=py37hc8dfbb8_1 | ||
| - conda-package-handling=1.6.0=py37h516909a_1 | ||
| - cryptography=2.8=py37h72c5cf5_1 | ||
| - curl=7.65.3=hf8cf82a_0 | ||
| - fmlrc=1.0.0=h6bb024c_0 | ||
| - htslib=1.9=h4da6232_3 | ||
| - idna=2.8=py37_1000 | ||
| - krb5=1.16.4=h2fd8d38_0 | ||
| - libcurl=7.65.3=hda55be3_0 | ||
| - libdeflate=1.5=h516909a_0 | ||
| - libedit=3.1.20170329=hf8c457e_1001 | ||
| - libffi=3.2.1=he1b5a44_1006 | ||
| - libgcc-ng=9.2.0=h24d8f2e_2 | ||
| - libgomp=9.2.0=h24d8f2e_2 | ||
| - libssh2=1.8.2=h22169c7_2 | ||
| - libstdcxx-ng=9.2.0=hdf63c60_2 | ||
| - ncurses=6.1=hf484d3e_1002 | ||
| - openssl=1.1.1f=h516909a_0 | ||
| - pycosat=0.6.3=py37h516909a_1002 | ||
| - pycparser=2.19=py37_1 | ||
| - pyopenssl=19.1.0=py37_0 | ||
| - pysocks=1.7.1=py37_0 | ||
| - python=3.7.3=h5b0a415_0 | ||
| - python_abi=3.7=1_cp37m | ||
| - readline=7.0=hf8c457e_1001 | ||
| - requests=2.22.0=py37_1 | ||
| - ruamel_yaml=0.15.80=py37h516909a_1000 | ||
| - samtools=1.9=h10a08f8_12 | ||
| - setuptools=44.0.0=py37_0 | ||
| - six=1.13.0=py37_0 | ||
| - sqlite=3.26.0=h67949de_1001 | ||
| - tk=8.6.10=hed695b0_0 | ||
| - tqdm=4.41.1=py_0 | ||
| - urllib3=1.25.7=py37_0 | ||
| - wheel=0.33.6=py37_0 | ||
| - xz=5.2.4=h14c3975_1001 | ||
| - yaml=0.2.2=h516909a_1 | ||
| - zlib=1.2.11=h516909a_1006 | ||
| - pip: | ||
| - biopython==1.73 | ||
| - cycler==0.10.0 | ||
| - kiwisolver==1.0.1 | ||
| - matplotlib==3.0.2 | ||
| - numpy==1.15.2 | ||
| - pip==19.0.3 | ||
| - pyparsing==2.3.1 | ||
| - python-dateutil==2.8.0 | ||
| - scipy==1.2.1 | ||
| prefix: /shelf/apps/pjt6/conda |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| name: bbnorm | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| - R | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=1_gnu | ||
| - bbmap=38.90=h1296035_0 | ||
| - bzip2=1.0.8=h7f98852_4 | ||
| - libgcc-ng=9.3.0=h2828fa1_18 | ||
| - libgomp=9.3.0=h2828fa1_18 | ||
| - openjdk=10.0.2=h14c3975_1015 | ||
| - pbzip2=1.1.13=0 | ||
| prefix: /shelf/apps/pjt6/conda/envs/bbnorm |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| name: bcftools | ||
| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults | ||
| - R | ||
| dependencies: | ||
| - bcftools=1.9=h4da6232_0 | ||
| - bzip2=1.0.6=h470a237_2 | ||
| - ca-certificates=2020.4.5.1=hecc5488_0 | ||
| - curl=7.62.0=h74213dd_0 | ||
| - krb5=1.16.2=hbb41f41_0 | ||
| - libcurl=7.62.0=hbdb9355_0 | ||
| - libdeflate=1.0=h470a237_0 | ||
| - libedit=3.1.20170329=haf1bffa_1 | ||
| - libgcc-ng=7.2.0=hdf63c60_3 | ||
| - libssh2=1.8.0=h5b517e9_3 | ||
| - libstdcxx-ng=7.2.0=hdf63c60_3 | ||
| - ncurses=6.1=hfc679d8_1 | ||
| - openssl=1.0.2p=h470a237_1 | ||
| - samtools=1.9=h8ee4bcc_1 | ||
| - tk=8.6.9=ha92aebf_0 | ||
| - xz=5.2.4=h470a237_1 | ||
| - zlib=1.2.11=h470a237_3 | ||
| prefix: /shelf/apps/pjt6/conda/envs/bcftools |
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