download nr directly

peterthorpe5 · Jan 25, 2023 · a3c6419 · a3c6419
1 parent 07bd858
commit a3c6419
Showing 1 changed file with 9 additions and 1 deletion.
diff --git a/Diamond_BLAST_add_taxonomic_info/Download_all_files_I_need.sh b/Diamond_BLAST_add_taxonomic_info/Download_all_files_I_need.sh
@@ -390,9 +390,17 @@ echo downloading and unzipping done
 
 export BLASTDB=$`pwd` 
 
-blastdbcmd -entry 'all' -db nr > nr.faa
+#blastdbcmd -entry 'all' -db nr > nr.faa
+
+wget https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/nr.gz
+
+wget https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/swissprot.gz 
 
 echo "downloading and unzipping done"
 
+ln -s nr nr.faa
+
+ln -s Swiss-rot swissprot.faa
+
 python prepare_accession_to_description_db.py