Embedding Complexity In the Data Representation Instead of In the Model

Embedding Complexity In the Data Representation Instead of In the Model: A Case Study Using Heterogeneous Medical Data

arXiv:1802.04233

Project structure

patient2vec

SQL queries, data processing and training scripts for building the semantic embedding.

breast_cancer, diabetes, lung_cancer

SQL queries, data processing, training, evaluation scripts and logs for classification tasks used to test usefulness of semantic embeddings.

figures

Scripts for figure generation.

trajectories

Scripts for trajectory figure generation and trajectory images (static PNG and animated GIF files).

Trajectories - examples

Breast cancer

Diabetes

Lung cancer