Fix NA in SOC share calculations

.buildlibrary

@@ -1,4 +1,4 @@
-ValidationKey: '51515100'
+ValidationKey: '51534990'
 AutocreateReadme: yes
 AcceptedWarnings:
 - 'Warning: package .* was built under R version'

CITATION.cff

@@ -2,7 +2,7 @@ cff-version: 1.2.0
 message: If you use this software, please cite it using the metadata from this file.
 type: software
 title: 'mrvalidation: madrat data preparation for validation purposes'
-version: 2.59.0
+version: 2.59.1
 date-released: '2024-06-16'
 abstract: Package contains routines to prepare data for validation exercises.
 authors:

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: mrvalidation
 Title: madrat data preparation for validation purposes
-Version: 2.59.0
+Version: 2.59.1
 Date: 2024-06-16
 Authors@R: c(
     person("Benjamin Leon", "Bodirsky", , "[email protected]", role = c("aut", "cre")),

R/calcValidSOCShare.R

@@ -34,9 +34,11 @@ calcValidSOCShare <- function(datasource = "histSOCbudget") {
     equStock  <- mbind(equStock, add_dimension(dimSums(equStock, dim = 3.1), add = "landuse", nm = "total"))
     pEquStock <- mbind(pEquStock, add_dimension(dimSums(pEquStock, dim = 3.1), add = "landuse", nm = "total"))
 
-    somShare <- somStock / natStock
     unit          <- "(tC/tC)"
     zeroOrderName <- "Resources|Soil Carbon|Actual|Carbon Share|SOC in top 30 cm"
+    somShare <- somStock / natStock
+    # replace NAs with 1, as the weights are zero for this country the value does not matter
+    somShare <- toolConditionalReplace(somShare, "is.na()", replaceby = 1)
     out <- mbind(setNames(somShare[, , "total"],  paste0(zeroOrderName, " ", unit)),
                  setNames(somShare[, , "crop"],   paste0(zeroOrderName, "|+|Cropland Soils ", unit)),
                  setNames(somShare[, , "natveg"], paste0(zeroOrderName, "|+|Noncropland Soils ", unit)))
@@ -47,6 +49,8 @@ calcValidSOCShare <- function(datasource = "histSOCbudget") {
 
     zeroOrderName <- "Resources|Soil Carbon|Target|Carbon Share|SOC in top 30 cm"
     equSomShare   <- equStock / pEquStock
+    # replace NAs with 1, as the weights are zero for this country the value does not matter
+    equSomShare <- toolConditionalReplace(equSomShare, "is.na()", replaceby = 1)
     out <- mbind(out,
                  setNames(equSomShare[, , "total"],  paste0(zeroOrderName, " ", unit)),
                  setNames(equSomShare[, , "crop"],   paste0(zeroOrderName, "|+|Cropland Soils ", unit)),

README.md

@@ -1,6 +1,6 @@
 # madrat data preparation for validation purposes
 
-R package **mrvalidation**, version **2.59.0**
+R package **mrvalidation**, version **2.59.1**
 
 [![CRAN status](https://www.r-pkg.org/badges/version/mrvalidation)](https://cran.r-project.org/package=mrvalidation) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4317826.svg)](https://doi.org/10.5281/zenodo.4317826) [![R build status](https://github.com/pik-piam/mrvalidation/workflows/check/badge.svg)](https://github.com/pik-piam/mrvalidation/actions) [![codecov](https://codecov.io/gh/pik-piam/mrvalidation/branch/master/graph/badge.svg)](https://app.codecov.io/gh/pik-piam/mrvalidation) [![r-universe](https://pik-piam.r-universe.dev/badges/mrvalidation)](https://pik-piam.r-universe.dev/builds)
 
@@ -39,7 +39,7 @@ In case of questions / problems please contact Benjamin Leon Bodirsky <bodirsky@
 
 To cite package **mrvalidation** in publications use:
 
-Bodirsky B, Wirth S, Karstens K, Humpenoeder F, Stevanovic M, Mishra A, Biewald A, Weindl I, Beier F, Chen D, Crawford M, Leip D, Molina Bacca E, Kreidenweis U, W. Yalew A, von Jeetze P, Wang X, Dietrich J, Alves M (2024). _mrvalidation: madrat data preparation for validation purposes_. doi:10.5281/zenodo.4317826 <https://doi.org/10.5281/zenodo.4317826>, R package version 2.59.0, <https://github.com/pik-piam/mrvalidation>.
+Bodirsky B, Wirth S, Karstens K, Humpenoeder F, Stevanovic M, Mishra A, Biewald A, Weindl I, Beier F, Chen D, Crawford M, Leip D, Molina Bacca E, Kreidenweis U, W. Yalew A, von Jeetze P, Wang X, Dietrich J, Alves M (2024). _mrvalidation: madrat data preparation for validation purposes_. doi:10.5281/zenodo.4317826 <https://doi.org/10.5281/zenodo.4317826>, R package version 2.59.1, <https://github.com/pik-piam/mrvalidation>.
 
 A BibTeX entry for LaTeX users is
 
@@ -48,7 +48,7 @@ A BibTeX entry for LaTeX users is
   title = {mrvalidation: madrat data preparation for validation purposes},
   author = {Benjamin Leon Bodirsky and Stephen Wirth and Kristine Karstens and Florian Humpenoeder and Mishko Stevanovic and Abhijeet Mishra and Anne Biewald and Isabelle Weindl and Felicitas Beier and David Chen and Michael Crawford and Debbora Leip and Edna {Molina Bacca} and Ulrich Kreidenweis and Amsalu {W. Yalew} and Patrick {von Jeetze} and Xiaoxi Wang and Jan Philipp Dietrich and Marcos Alves},
   year = {2024},
-  note = {R package version 2.59.0},
+  note = {R package version 2.59.1},
   doi = {10.5281/zenodo.4317826},
   url = {https://github.com/pik-piam/mrvalidation},
 }