Skip to content

Commit

Permalink
Add example input metadata
Browse files Browse the repository at this point in the history
  • Loading branch information
jykr authored Sep 26, 2023
1 parent c0a94ea commit d28dfd6
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ bean-count-samples \

### Input file format
#### 1. gRNA_library.csv
File should contain following columns.
File should contain following columns. Also see [example](crispr-bean/tests/test_guide_info.csv).
* `name`: gRNA ID column
* `sequence`: gRNA sequence
* `barcode`: R2 barcode to help match reporter to gRNA
Expand Down Expand Up @@ -86,7 +86,7 @@ File should contain following columns with header.
* `upper_quantile [Optional]`: FACS sorting upper quantile
* `lower_quantile [Optional]`: FACS sorting lower quantile

Optional columns are not required but can be provided for compatibility with `bean-qc` and `bean-run`.
Optional columns are not required but can be provided for compatibility with `bean-qc` and `bean-run`. See [example](tests/data/sample_list.csv).

### Output file format
`count` or `count-samples` produces `.h5ad` and `.xlsx` file with guide and per-guide allele counts.
Expand Down

0 comments on commit d28dfd6

Please sign in to comment.