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Updated HIPAA documentation to include a section on software environm…
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…ent. (#83)

Co-authored-by: Kim Wong <[email protected]>
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burntyellow and Kim Wong authored Dec 13, 2024
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22 changes: 20 additions & 2 deletions docs/getting-started/access_hipaa.md
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Expand Up @@ -220,15 +220,33 @@ for your OS. The previous link provides instructions for various types of device

From within the AVD, all CRC webportals are accessible, including

* **Open OnDemand:** [https://viz.res.crc.pitt.edu](https://viz.res.crc.pitt.edu)
* **Open OnDemand:** [https://ondemand.res.crc.pitt.edu](https://ondemand.res.crc.pitt.edu)

![MacOS-AVD-Webportals-01](../_assets/img/avd/MacOS-AVD-Webportals-01-HIPAA.png)

![MacOS-AVD-Webportals-02](../_assets/img/avd/MacOS-AVD-Webportals-02-HIPAA.png)

![MacOS-AVD-Webportals-03](../_assets/img/avd/MacOS-AVD-Webportals-03-HIPAA.png)

##**4. ^^Ending your AVD session^^**
##**4. ^^Recommendations on setting up your software environment^^**

The CRC team will work with you to set up the software environment. Where self service is possible, we will point
you to the appropriate documentation that shows you how to do this yourself. If you run into problems, please
submit a [**help ticket**](https://services.pitt.edu/TDClient/33/Portal/Requests/TicketRequests/NewForm?ID=yXkHi62rHa8_&RequestorType=Service)
and we will engage in finding the solution. We summarize below, the best practices for various software.

* **R and RStudio** -- Most users will already have a working environment and will want to transfer
packages from there to the CRC HIPAA environment. Here is a
[**blog post**](https://www.r-bloggers.com/2017/07/quick-way-of-installing-all-your-old-r-libraries-on-a-new-device/) that
shows how to automate the package installation process in three steps.

* **Python** -- The CRC provides [**guidance on setting up a Python environment**](../applications/python.md). One
way clone an environment from one system to another is to create a requirements file and then to use that for the
package installation in the other system. This is described in
the [**pip documentation**](https://pip.pypa.io/en/latest/user_guide/#requirements-files).


##**5. ^^Ending your AVD session^^**

Once you are done with your work session, be sure to Sign out.

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