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Include FAQ item regarding email notifications for sbatch jobs
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@@ -171,6 +171,13 @@ Automate any manipulation of the job's output files at the end of the script. | |
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## Frequently Asked Questions | ||
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### Q: I don't receive any email notifications about my job despite having supplied --mail-type and --mail-user, what gives? | ||
A: This most frequently due to users providing only their username, and not the following domain in their SBATCH directive. | ||
You **need** to provide your email as `[email protected]` for emails to be sent correctly. In more rare cases, the queue | ||
for emails can be filled by an individual user by submitting many jobs. This should eventually be resolved on its own, | ||
but it can be avoided by using proper etiquette when submitting a large quantity of jobs, and removing the email | ||
notification directive for all/many of the submissions and monitoring more interactively with `squeue`. | ||
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### Q: Where can I find more specific examples of these batch scripts? | ||
A: Example Jobs utilizing commonly loaded modules can be found in `/ihome/crc/how_to_run` | ||
For users performing NGS analyses on HTC, see Dr. Fangping Mu's | ||
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