Updates CI

.github/dependabot.yml

@@ -4,22 +4,17 @@ updates:
     directory: "/"
     schedule:
       interval: "monthly"
-    open-pull-requests-limit: 10
+    open-pull-requests-limit: 100
     groups:
       python-dependencies:
         patterns:
           - "*"
-        exclude-patterns:
-          - "sphinx*"
-      documentation-dependencies:
-        patterns:
-          - "sphinx*"
 
   - package-ecosystem: "github-actions"
     directory: "/"
     schedule:
       interval: "monthly"
-    open-pull-requests-limit: 10
+    open-pull-requests-limit: 100
     groups:
       actions-dependencies:
         patterns:

.github/workflows/CodeQL.yml

@@ -6,7 +6,7 @@ on:
   pull_request:
     branches: [ main ]
   schedule:
-    - cron: 25 5 * * 0
+    - cron: 0 7 1 * *
 
 jobs:
   analyze:
@@ -23,16 +23,26 @@ jobs:
         language: [ python ]
 
     steps:
-    - name: Checkout repository
-      uses: actions/checkout@v4
+      - name: Checkout repository
+        uses: actions/checkout@v4
 
-    # Initializes the CodeQL tools for scanning.
-    - name: Initialize CodeQL
-      uses: github/codeql-action/init@v2
-      with:
-        languages: ${{ matrix.language }}
+      - name: Initialize CodeQL
+        uses: github/codeql-action/init@v2
+        with:
+          languages: ${{ matrix.language }}
 
-    - name: Perform CodeQL Analysis
-      uses: github/codeql-action/analyze@v2
-      with:
-        category: /language:${{matrix.language}}
+      - name: Perform CodeQL Analysis
+        uses: github/codeql-action/analyze@v2
+        with:
+          category: /language:${{matrix.language}}
+
+  # Use this job for branch protection rules
+  report-codeql-status:
+    name: Report CodeQL Status
+    if: always()
+    needs: analyze
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check build status
+        if: ${{ contains(needs.*.result, 'failure') }}
+        run: exit 1

.github/workflows/PackageTest.yml

@@ -4,6 +4,8 @@ on:
   workflow_dispatch:
   workflow_call:
   push:
+  schedule:
+    - cron: 0 7 1,15 * *
 
 jobs:
   run-tests:
@@ -19,6 +21,8 @@ jobs:
         python_version:
           - 3.8
           - 3.9
+          - 3.10
+          - 3.11
 
     container:
       image: ghcr.io/pitt-crc/test-env:${{ matrix.slurm_version }}
@@ -30,16 +34,13 @@ jobs:
       - name: Setup environment
         run: /usr/local/bin/entrypoint.sh
 
-      - name: Set Up Bank DB Location
-        run: mkdir -p /ihome/crc/bank 
+      - name: Checkout source code
+        uses: actions/checkout@v3
 
-      - name: Checkout repository
-        uses: actions/checkout@v4
-
-      - name: Install poetry
-        run: |
-          pip install poetry
-          poetry env use python${{ matrix.python_version }}
+      - name: Install Poetry
+        uses: snok/install-poetry@v1
+        with:
+          virtualenvs-create: false
 
       - name: Install dependencies
         run: poetry install --with tests