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Isolate sequencing option in -s SAMPLE_TYPE #261

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AShaw1802 opened this issue Nov 6, 2024 · 0 comments
Open

Isolate sequencing option in -s SAMPLE_TYPE #261

AShaw1802 opened this issue Nov 6, 2024 · 0 comments

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@AShaw1802
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I'll be looking into default parameters for isolate sequencing this week, which will likely be a much higher depth requirement. Could you please add "isolate" under "SAMPLE_TYPE" as an option, and I'll tag the settings ASAP. It would also be handy if "isolate" replaced "DDNS" in header of the output sequences (so " ddns_group=Sabin3-related" would become " isolate_group=Sabin3-related") so that we know the sequences are from isolates.
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@AShaw1802