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38 Open 174 Closed
38 Open 174 Closed
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Issues list

Isolate sequencing option in -s SAMPLE_TYPE
#261 opened Nov 6, 2024 by AShaw1802
default depth threshold has changed from 50 to 20?
#260 opened Oct 17, 2024 by cathrnbp
subthreshold analysis if same. epid is flagged as positive in another sample
#259 opened Oct 10, 2024 by aineniamh
flag if same epid and check for concurrence
#258 opened Oct 10, 2024 by aineniamh
orange flag intermediate read counts
#257 opened Oct 10, 2024 by aineniamh
other platforms check
#256 opened Oct 10, 2024 by aineniamh
check if html table can be editable with pass and fail col
#255 opened Oct 10, 2024 by aineniamh
put sample type in header- stool, es, isolate
#254 opened Oct 10, 2024 by aineniamh
haplotyping probability pipeline with zoe's prototype
#253 opened Oct 10, 2024 by aineniamh
demultiplexing as part of piranha- reducks?
#252 opened Oct 10, 2024 by aineniamh
change default in percent to 0
#251 opened Oct 10, 2024 by aineniamh
unit tests
#250 opened Oct 10, 2024 by aineniamh
pick out relevant seqs of a certain distance and build subtrees
#249 opened Oct 10, 2024 by aineniamh
add in pass/fail col and include in the sequence name too
#248 opened Oct 10, 2024 by aineniamh
videos describing how to use piranha
#246 opened Aug 29, 2024 by aineniamh
lineage assignment for pv detected samples
#245 opened Aug 29, 2024 by aineniamh
Error in rule generate_consensus_sequences V1.3
#244 opened Aug 19, 2024 by jeroencremer
1
Error in rule generate_consensus_sequences V1.2.1, V1.2.5
#242 opened Aug 2, 2024 by jeroencremer
9
Error when running piranha cl and gui
#240 opened Jul 11, 2024 by cathrnbp
2
Semicolon as separator in barcodes.csv
#235 opened Apr 18, 2024 by ebujaki
1
New install issue - Snakemake and PuLP conflict
#234 opened Apr 16, 2024 by Desperate-Dan
1
Labels not visible on tree in report
#226 opened Mar 12, 2024 by AShaw1802
2
min percentage not met- still make a consensus sequence
#208 opened Nov 27, 2023 by aineniamh
1
if background is going to get very big with auto-accumulation, think of a way to boil it down to a smaller sample.
#207 opened Nov 27, 2023 by aineniamh
show header fields from seqs in background and newly generated in metadata
#206 opened Nov 27, 2023 by aineniamh
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