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serjisa authored Apr 9, 2024
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Expand Up @@ -3,12 +3,15 @@ Symphonypy — port of Symphony algorithm of single-cell reference atlas mapping

Symphonypy is a Python port of the original R Symphony package for label transfer.

To cite this package, please refer the original Symphony paper::
In the case of usage in your work, please cite the original Symphony paper::

Kang JB, Nathan A, Weinand K, Zhang F, Millard N, Rumker L, Moody DB, Korsunsky I, Raychaudhuri S
Efficient and precise single-cell reference atlas mapping with Symphony
Nat Commun. 2021 Oct 7;12(1):5890. doi: 10.1038/s41467-021-25957-x

The package inculdes slightly modified version of ``sce.pp.harmony_integrate()`` and ``sc.tl.ingest()`` for
better experience and gives an interface for t-SNE embedding coordinates transfer via ``openTSNE`` Python package.

.. toctree::
:caption: Main
:maxdepth: 2
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