Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add muscle tutorial #471

Draft
wants to merge 42 commits into
base: develop
Choose a base branch
from
Draft

Add muscle tutorial #471

wants to merge 42 commits into from

Commits on Feb 26, 2024

  1. Create tutorial structure

    @carme-hp
    carme-hp committed Feb 26, 2024
    Configuration menu
    Copy the full SHA
    822cb19 View commit details
    Browse the repository at this point in the history

  2. Add sample structure for an opendihu participant

    @carme-hp
    carme-hp committed Feb 26, 2024
    Configuration menu
    Copy the full SHA
    cc8b43c View commit details
    Browse the repository at this point in the history

Commits on Feb 27, 2024

  1. Move src code to opendihu-solver folder

    @carme-hp
    carme-hp committed Feb 27, 2024
    Configuration menu
    Copy the full SHA
    feef2d0 View commit details
    Browse the repository at this point in the history

  2. Complete opendihu participants

    @carme-hp
    carme-hp committed Feb 27, 2024
    Configuration menu
    Copy the full SHA
    cfbe718 View commit details
    Browse the repository at this point in the history

  3. Update README

    @carme-hp
    carme-hp committed Feb 27, 2024
    Configuration menu
    Copy the full SHA
    3eb5bb0 View commit details
    Browse the repository at this point in the history

Commits on Feb 29, 2024

  1. Get muscle participant to run

    @carme-hp
    carme-hp committed Feb 29, 2024
    Configuration menu
    Copy the full SHA
    b559c85 View commit details
    Browse the repository at this point in the history

Commits on Mar 4, 2024

  1. Add check for OPENDIHU_HOME

    @carme-hp
    carme-hp committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    1b4f1fe View commit details
    Browse the repository at this point in the history

  2. Rename meshName to preciceMeshName

    @carme-hp
    carme-hp committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    0cb1947 View commit details
    Browse the repository at this point in the history

  3. Fix rename

    @carme-hp
    carme-hp committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    bcbc6fd View commit details
    Browse the repository at this point in the history

  4. Fix paths, variables and add scripts

    @carme-hp
    carme-hp committed Mar 4, 2024
    Configuration menu
    Copy the full SHA
    ff5ed78 View commit details
    Browse the repository at this point in the history

Commits on Mar 5, 2024

  1. Add remove precice-run to clean.sh

    @carme-hp
    carme-hp committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    a80cfaa View commit details
    Browse the repository at this point in the history

  2. Fix bc errors

    @carme-hp
    carme-hp committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    b383782 View commit details
    Browse the repository at this point in the history

  3. Setup exchange directory and remove comments

    @carme-hp
    carme-hp committed Mar 5, 2024
    Configuration menu
    Copy the full SHA
    0bdcb05 View commit details
    Browse the repository at this point in the history

Commits on Mar 10, 2024

  1. Add information about OpenDiHu

    @carme-hp
    carme-hp committed Mar 10, 2024
    Configuration menu
    Copy the full SHA
    c6091ae View commit details
    Browse the repository at this point in the history

  2. Add .gitignore

    @carme-hp
    carme-hp committed Mar 10, 2024
    Configuration menu
    Copy the full SHA
    1d31091 View commit details
    Browse the repository at this point in the history

Commits on Mar 11, 2024

  1. Merge branch 'develop' into add-muscle-tutorial

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    f555039 View commit details
    Browse the repository at this point in the history

  2. Fix Markdown linting issues in muscle tutorial README

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    6bfa0a9 View commit details
    Browse the repository at this point in the history

  3. Fix Markdown linting issues in muscle tutorial README

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    5459862 View commit details
    Browse the repository at this point in the history

  4. Remove unrelated results image - fix check.sh

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    c3b4db8 View commit details
    Browse the repository at this point in the history

  5. Mark shell scripts as executable

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    b24c63d View commit details
    Browse the repository at this point in the history

  6. Fix shellcheck errors

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    50333ef View commit details
    Browse the repository at this point in the history

  7. Format with autopep8 

    autopep8 --in-place --exit-code --aggressive --ignore=E402 --max-line-length=120 file.py
    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    0a5858a View commit details
    Browse the repository at this point in the history

  8. Bump GItHub Action autopep8 from v1 to v2

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    e3bd5e2 View commit details
    Browse the repository at this point in the history

  9. Format more files with autopep8 

    pip3 install --user autopep8
autopep8 --recursive --in-place --aggressive --exit-code --ignore E402 --max-line-length 120 .
    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    83f7597 View commit details
    Browse the repository at this point in the history

  10. Double --aggressive autopep8

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    dcd7a3f View commit details
    Browse the repository at this point in the history

  11. Double --aggressive autopep8

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    f9325f3 View commit details
    Browse the repository at this point in the history

  12. Minor fixes in muscle tutorial README

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    bbfa73e View commit details
    Browse the repository at this point in the history

  13. Add a clean_opendihu function, adjust cleaning scripts

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    9660161 View commit details
    Browse the repository at this point in the history

  14. Rename opendihu-solver to solver-opendihu

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    13ccd83 View commit details
    Browse the repository at this point in the history

  15. solver-opendihu scripts: set -e -u 

    - Exit on errors
- Complain for undefined variables
    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    d9141f5 View commit details
    Browse the repository at this point in the history

  16. Fix clean_opendihu call to clean_precice_logs

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    9ec1cdb View commit details
    Browse the repository at this point in the history

  17. Further fixes in solver-opendihu/clean.sh

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    b3602f0 View commit details
    Browse the repository at this point in the history

  18. Apply set -e -u to more shell scripts

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    e908415 View commit details
    Browse the repository at this point in the history

  19. Format precice-config.xml

    @MakisH
    MakisH committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    b7e9272 View commit details
    Browse the repository at this point in the history

  20. Update muscle-tendon-complex/README.md 

    Co-authored-by: Gerasimos Chourdakis <[email protected]>
    @carme-hp @MakisH
    carme-hp and MakisH authored Mar 11, 2024
    Configuration menu
    Copy the full SHA
    2e6dc39 View commit details
    Browse the repository at this point in the history

  21. Update muscle-tendon-complex/solver-opendihu/src/tendon-solver.cpp 

    Co-authored-by: Gerasimos Chourdakis <[email protected]>
    @carme-hp @MakisH
    carme-hp and MakisH authored Mar 11, 2024
    Configuration menu
    Copy the full SHA
    09d53d6 View commit details
    Browse the repository at this point in the history

  22. Update muscle-tendon-complex/solver-opendihu/src/muscle-solver.cpp 

    Co-authored-by: Gerasimos Chourdakis <[email protected]>
    @carme-hp @MakisH
    carme-hp and MakisH authored Mar 11, 2024
    Configuration menu
    Copy the full SHA
    37233da View commit details
    Browse the repository at this point in the history

  23. Explain activation and add citation

    @carme-hp
    carme-hp committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    76b5a0f View commit details
    Browse the repository at this point in the history

  24. Use pre-commit

    @carme-hp
    carme-hp committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    db6820e View commit details
    Browse the repository at this point in the history

  25. Use pre-commit

    @carme-hp
    carme-hp committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    535342f View commit details
    Browse the repository at this point in the history

  26. Merge branch 'add-muscle-tutorial' of github.com:carme-hp/tutorials i… 

    …nto add-muscle-tutorial
    @carme-hp
    carme-hp committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    75c09ff View commit details
    Browse the repository at this point in the history

  27. Add automatically generated folder to gitignore

    @carme-hp
    carme-hp committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    755c3e4 View commit details
    Browse the repository at this point in the history