Skip to content
View psmyth94's full-sized avatar
5 followers · 3 following

Sponsoring

@coreylowman

Achievements

Achievement: Public SponsorAchievement: Pull SharkAchievement: Pair Extraordinaire

Achievements

Achievement: Public SponsorAchievement: Pull SharkAchievement: Pair Extraordinaire

Block or report psmyth94

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
psmyth94/README.md

👋 Hello, I'm Patrick!

I am currently working on creating a suite of tools to address challenges of applying ML in bioinformatics:

  • biosets - Dataset management and integration in bioinformatics (Released).
  • biofit - Model preprocessing and fitting solutions (Released).
  • biorun - An autotrainer built on top of biosets and biofit (80% complete).
  • bioserve - Tools for deploying, analyzing, and comparing bioinformatics models (50% complete).

Medical Imaging

I am also working on tools that facilitate the use of mamba and CLIP in medical imaging:

  • mamba-clip - A tool for training mamba models in a distributed manner on medical images and associated text data.

📫 Connect with Me

For those interested in collaborating or discussing bioinformatics, machine learning, or AI in healthcare, feel free to reach out to me. I also am looking for people to join Kaggle competitions with, so if you are interested in that, let me know!

Pinned Loading

  1. biosets biosets Public

    A bioinformatics extension of 🤗 Datasets library, built for ML applications on biological and omics data, offering easy integration of metadata and low-code data management tools.

    Python 2

  2. biocore biocore Public

    Biocore provides common functions for the bio family of libraries (biosets, biofit, biorun, and bioserve), which addresses various steps in the end-to-end machine learning pipeline and are tailored…

    Python

  3. biofit biofit Public

    Python 1