Freeze versions of notebooks Python dependencies

.github/workflows/main.yml

@@ -185,12 +185,8 @@ jobs:
       - name: test_notebooks
         run: |
           sudo apt-get update && make install-depends
-          python3 -m pip install markupsafe==2.0.1
           export PATH=$PATH:/home/opam/.local/bin
-          pip3 install jupyter nbconvert seaborn==0.11.2 pandas==1.5.3 numpy==1.23.5
-          cd notebooks/sequential
-          sudo chmod 777 .
-          jupyter nbconvert --to html --execute sequential.ipynb
-          cd ../parallel
-          sudo chmod 777 .
-          jupyter nbconvert --to html --execute parallel.ipynb
+          cd notebooks/
+          pip3 install -r requirements.txt
+          jupyter nbconvert --to html --execute sequential/sequential.ipynb
+          jupyter nbconvert --to html --execute parallel/parallel.ipynb

notebooks/requirements.txt

@@ -0,0 +1,111 @@
+anyio==4.4.0
+argon2-cffi==23.1.0
+argon2-cffi-bindings==21.2.0
+arrow==1.3.0
+asttokens==2.4.1
+async-lru==2.0.4
+attrs==23.2.0
+Babel==2.15.0
+beautifulsoup4==4.12.3
+bleach==6.1.0
+certifi==2024.6.2
+cffi==1.16.0
+charset-normalizer==3.3.2
+comm==0.2.2
+contourpy==1.2.1
+cycler==0.12.1
+debugpy==1.8.1
+decorator==5.1.1
+defusedxml==0.7.1
+exceptiongroup==1.2.1
+executing==2.0.1
+fastjsonschema==2.19.1
+fonttools==4.53.0
+fqdn==1.5.1
+h11==0.14.0
+httpcore==1.0.5
+httpx==0.27.0
+idna==3.7
+ipykernel==6.29.4
+ipython==8.25.0
+ipywidgets==8.1.3
+isoduration==20.11.0
+jedi==0.19.1
+Jinja2==3.1.4
+json5==0.9.25
+jsonpointer==2.4
+jsonschema==4.22.0
+jsonschema-specifications==2023.12.1
+jupyter==1.0.0
+jupyter-console==6.6.3
+jupyter-events==0.10.0
+jupyter-lsp==2.2.5
+jupyter_client==8.6.2
+jupyter_core==5.7.2
+jupyter_server==2.14.1
+jupyter_server_terminals==0.5.3
+jupyterlab==4.2.1
+jupyterlab_pygments==0.3.0
+jupyterlab_server==2.27.2
+jupyterlab_widgets==3.0.11
+kiwisolver==1.4.5
+MarkupSafe==2.0.1
+matplotlib==3.7.1
+matplotlib-inline==0.1.7
+mistune==3.0.2
+nbclient==0.10.0
+nbconvert==7.16.4
+nbformat==5.10.4
+nest-asyncio==1.6.0
+notebook==7.2.0
+notebook_shim==0.2.4
+numpy==1.23.5
+overrides==7.7.0
+packaging==24.0
+pandas==1.5.3
+pandocfilters==1.5.1
+parso==0.8.4
+pexpect==4.9.0
+pillow==10.3.0
+platformdirs==4.2.2
+prometheus_client==0.20.0
+prompt_toolkit==3.0.45
+psutil==5.9.8
+ptyprocess==0.7.0
+pure-eval==0.2.2
+pycparser==2.22
+Pygments==2.18.0
+pyparsing==3.1.2
+python-dateutil==2.9.0.post0
+python-json-logger==2.0.7
+pytz==2024.1
+PyYAML==6.0.1
+pyzmq==26.0.3
+qtconsole==5.5.2
+QtPy==2.4.1
+referencing==0.35.1
+requests==2.32.3
+rfc3339-validator==0.1.4
+rfc3986-validator==0.1.1
+rpds-py==0.18.1
+scipy==1.13.1
+seaborn==0.11.2
+Send2Trash==1.8.3
+six==1.16.0
+sniffio==1.3.1
+soupsieve==2.5
+stack-data==0.6.3
+terminado==0.18.1
+tinycss2==1.3.0
+tomli==2.0.1
+tornado==6.4
+traitlets==5.14.3
+types-python-dateutil==2.9.0.20240316
+typing_extensions==4.12.1
+uri-template==1.3.0
+urllib3==2.2.1
+wcwidth==0.2.13
+webcolors==1.13
+webencodings==0.5.1
+websocket-client==1.8.0
+widgetsnbextension==4.0.11