Migrate code and build library #6
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| name: Build wheels | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - "main" | |
| env: | |
| CIBW_BUILD_VERBOSITY: 2 | |
| CIBW_BUILD_FRONTEND: "pip; args: --no-build-isolation" | |
| # Skip PyPy and MUSL builds in any and all jobs | |
| CIBW_SKIP: "pp* *musllinux*" | |
| FORCE_COLOR: 3 | |
| jobs: | |
| build_windows_wheels: | |
| name: Wheels (windows-latest) | |
| runs-on: windows-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Get number of cores on Windows | |
| id: get_num_cores | |
| shell: python | |
| run: | | |
| from os import environ, cpu_count | |
| num_cpus = cpu_count() | |
| output_file = environ['GITHUB_OUTPUT'] | |
| with open(output_file, "a", encoding="utf-8") as output_stream: | |
| output_stream.write(f"count={num_cpus}\n") | |
| - name: Install vcpkg on Windows | |
| run: | | |
| cd C:\ | |
| rm -r -fo 'C:\vcpkg' | |
| git clone https://github.com/microsoft/vcpkg | |
| cd vcpkg | |
| .\bootstrap-vcpkg.bat | |
| - name: Cache packages installed through vcpkg on Windows | |
| uses: actions/cache@v4 | |
| env: | |
| cache-name: vckpg_binary_cache | |
| with: | |
| path: C:\Users\runneradmin\AppData\Local\vcpkg\archives | |
| key: ${{ runner.os }}-build-VS2022-${{ env.cache-name }}-${{ hashFiles('vcpkg*.json') }} | |
| - name: Build wheels on Windows | |
| run: pipx run cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_ENVIRONMENT: > | |
| PYBAMM_USE_VCPKG=ON | |
| VCPKG_ROOT_DIR=C:\vcpkg | |
| VCPKG_DEFAULT_TRIPLET=x64-windows-static-md | |
| VCPKG_FEATURE_FLAGS=manifests,registries | |
| CMAKE_GENERATOR="Visual Studio 17 2022" | |
| CMAKE_GENERATOR_PLATFORM=x64 | |
| CMAKE_BUILD_PARALLEL_LEVEL=${{ steps.get_num_cores.outputs.count }} | |
| CIBW_ARCHS: AMD64 | |
| CIBW_BEFORE_BUILD: python -m pip install setuptools wheel delvewheel # skip CasADi and CMake | |
| CIBW_REPAIR_WHEEL_COMMAND: delvewheel repair --add-path C:/Windows/System32 -w {dest_dir} {wheel} | |
| CIBW_TEST_EXTRAS: "dev" | |
| CIBW_TEST_COMMAND: | | |
| python -m pytest {project}/tests/unit | |
| - name: Upload Windows wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels_windows | |
| path: ./wheelhouse/*.whl | |
| if-no-files-found: error | |
| build_manylinux_wheels: | |
| name: Wheels (linux-amd64) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Build wheels on Linux | |
| run: pipx run cibuildwheel --output-dir wheelhouse | |
| env: | |
| CIBW_ARCHS_LINUX: x86_64 | |
| CIBW_BEFORE_ALL_LINUX: > | |
| yum -y install openblas-devel lapack-devel && | |
| bash install_sundials.sh | |
| CIBW_BEFORE_BUILD_LINUX: python -m pip install cmake casadi setuptools wheel | |
| CIBW_REPAIR_WHEEL_COMMAND_LINUX: auditwheel repair -w {dest_dir} {wheel} | |
| CIBW_TEST_EXTRAS: "dev" | |
| CIBW_TEST_COMMAND: | | |
| set -e -x | |
| python -m pytest {project}/tests | |
| - name: Upload wheels for Linux | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels_manylinux | |
| path: ./wheelhouse/*.whl | |
| if-no-files-found: error | |
| build_macos_wheels: | |
| name: Wheels (${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [macos-13, macos-14] | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| - name: Install cibuildwheel | |
| run: python -m pip install cibuildwheel | |
| - name: Build wheels on macOS | |
| shell: bash | |
| run: | | |
| set -e -x | |
| # Set LLVM-OpenMP URL | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| OPENMP_URL="https://anaconda.org/conda-forge/llvm-openmp/11.1.0/download/osx-64/llvm-openmp-11.1.0-hda6cdc1_1.tar.bz2" | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| OPENMP_URL="https://anaconda.org/conda-forge/llvm-openmp/11.1.0/download/osx-arm64/llvm-openmp-11.1.0-hf3c4609_1.tar.bz2" | |
| fi | |
| # Download gfortran with proper macOS minimum version (11.0) | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| GFORTRAN_URL="https://github.com/isuruf/gcc/releases/download/gcc-11.3.0-2/gfortran-darwin-x86_64-native.tar.gz" | |
| KNOWN_SHA256="981367dd0ad4335613e91bbee453d60b6669f5d7e976d18c7bdb7f1966f26ae4 gfortran.tar.gz" | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| GFORTRAN_URL="https://github.com/isuruf/gcc/releases/download/gcc-11.3.0-2/gfortran-darwin-arm64-native.tar.gz" | |
| KNOWN_SHA256="84364eee32ba843d883fb8124867e2bf61a0cd73b6416d9897ceff7b85a24604 gfortran.tar.gz" | |
| fi | |
| # Validate gfortran tarball | |
| curl -L $GFORTRAN_URL -o gfortran.tar.gz | |
| if ! echo "$KNOWN_SHA256" != "$(shasum --algorithm 256 gfortran.tar.gz)"; then | |
| echo "Checksum failed" | |
| exit 1 | |
| fi | |
| mkdir -p gfortran_installed | |
| tar -xv -C gfortran_installed/ -f gfortran.tar.gz | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| export FC=$(pwd)/gfortran_installed/gfortran-darwin-x86_64-native/bin/gfortran | |
| export PATH=$(pwd)/gfortran_installed/gfortran-darwin-x86_64-native/bin:$PATH | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| export FC=$(pwd)/gfortran_installed/gfortran-darwin-arm64-native/bin/gfortran | |
| export PATH=$(pwd)/gfortran_installed/gfortran-darwin-arm64-native/bin:$PATH | |
| fi | |
| # link libgfortran dylibs and place them in $SOLVER_LIB_PATH | |
| # and then change rpath for each of them | |
| # Note: libgcc_s.1.dylib not available on macOS arm64; skip for now | |
| SOLVER_LIB_PATH=$(pwd)/.idaklu/lib | |
| mkdir -p $SOLVER_LIB_PATH | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| lib_dir=$(pwd)/gfortran_installed/gfortran-darwin-x86_64-native/lib | |
| for lib in libgfortran.5.dylib libgfortran.dylib libquadmath.0.dylib libquadmath.dylib libgcc_s.1.dylib libgcc_s.1.1.dylib; do | |
| cp $lib_dir/$lib $SOLVER_LIB_PATH/ | |
| install_name_tool -id $SOLVER_LIB_PATH/$lib $SOLVER_LIB_PATH/$lib | |
| codesign --force --sign - $SOLVER_LIB_PATH/$lib | |
| done | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| lib_dir=$(pwd)/gfortran_installed/gfortran-darwin-arm64-native/lib | |
| for lib in libgfortran.5.dylib libgfortran.dylib libquadmath.0.dylib libquadmath.dylib libgcc_s.1.1.dylib; do | |
| cp $lib_dir/$lib $SOLVER_LIB_PATH/. | |
| install_name_tool -id $SOLVER_LIB_PATH/$lib $SOLVER_LIB_PATH/$lib | |
| codesign --force --sign - $SOLVER_LIB_PATH/$lib | |
| done | |
| fi | |
| export SDKROOT=${SDKROOT:-$(xcrun --show-sdk-path)} | |
| # Can't download LLVM-OpenMP directly, use conda/mamba and set environment variables | |
| brew install miniforge | |
| mamba create -n pybammsolvers-dev $OPENMP_URL | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| PREFIX="/usr/local/Caskroom/miniforge/base/envs/pybammsolvers-dev" | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| PREFIX="/opt/homebrew/Caskroom/miniforge/base/envs/pybammsolvers-dev" | |
| fi | |
| # Copy libomp.dylib from PREFIX to $SOLVER_LIB_PATH, needed for wheel repair | |
| cp $PREFIX/lib/libomp.dylib $SOLVER_LIB_PATH/. | |
| install_name_tool -id $SOLVER_LIB_PATH/libomp.dylib $SOLVER_LIB_PATH/libomp.dylib | |
| codesign --force --sign - $SOLVER_LIB_PATH/libomp.dylib | |
| export CC=/usr/bin/clang | |
| export CXX=/usr/bin/clang++ | |
| export CPPFLAGS="$CPPFLAGS -Xpreprocessor -fopenmp" | |
| export CFLAGS="$CFLAGS -I$PREFIX/include" | |
| export CXXFLAGS="$CXXFLAGS -I$PREFIX/include" | |
| export LDFLAGS="$LDFLAGS -L$PREFIX/lib -lomp" | |
| # cibuildwheel not recognising its environment variable, so set manually | |
| export CIBUILDWHEEL="1" | |
| python install_KLU_Sundials.py | |
| python -m cibuildwheel --output-dir wheelhouse | |
| env: | |
| # 10.13 for Intel (macos-12/macos-13), 11.0 for Apple Silicon (macos-14 and macos-latest) | |
| MACOSX_DEPLOYMENT_TARGET: ${{ matrix.os == 'macos-14' && '11.0' || '10.13' }} | |
| CIBW_ARCHS_MACOS: auto | |
| CIBW_BEFORE_BUILD: python -m pip install cmake casadi setuptools wheel delocate | |
| CIBW_REPAIR_WHEEL_COMMAND: | | |
| if [[ $(uname -m) == "x86_64" ]]; then | |
| delocate-listdeps {wheel} && delocate-wheel -v -w {dest_dir} {wheel} | |
| elif [[ $(uname -m) == "arm64" ]]; then | |
| # Use higher macOS target for now since casadi/libc++.1.0.dylib is still not fixed | |
| delocate-listdeps {wheel} && delocate-wheel -v -w {dest_dir} {wheel} --require-target-macos-version 11.1 | |
| for file in {dest_dir}/*.whl; do mv "$file" "${file//macosx_11_1/macosx_11_0}"; done | |
| fi | |
| CIBW_TEST_EXTRAS: "dev" | |
| CIBW_TEST_COMMAND: | | |
| set -e -x | |
| python -m pytest {project}/tests | |
| - name: Upload wheels for macOS (amd64, arm64) | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels_${{ matrix.os }} | |
| path: ./wheelhouse/*.whl | |
| if-no-files-found: error |