MAINT: update sepp ref URL to non-versioned AWS location #232
Workflow file for this run
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name: ci | |
on: | |
pull_request: | |
push: | |
branches: | |
- master | |
jobs: | |
lint: | |
runs-on: ubuntu-latest | |
steps: | |
- name: checkout source | |
uses: actions/checkout@v2 | |
- name: set up python 3.9 | |
uses: actions/setup-python@v1 | |
with: | |
python-version: 3.9 | |
- name: install dependencies | |
run: python -m pip install --upgrade pip | |
- name: lint | |
run: | | |
pip install -q flake8 | |
flake8 | |
verify: | |
runs-on: ubuntu-latest | |
steps: | |
- name: checkout source | |
uses: actions/checkout@v2 | |
- name: install QIIME 2 amplicon distro | |
run: | | |
envFile=qiime2-amplicon-ubuntu-latest-conda.yml | |
wget https://raw.githubusercontent.com/qiime2/distributions/dev/2024.5/amplicon/released/$envFile | |
conda env create -q -p ./test-env --file $envFile | |
- name: install conda dependencies | |
shell: bash -l {0} | |
run: | | |
source "$CONDA/etc/profile.d/conda.sh" | |
conda install -p ./test-env -q pip | |
- name: install pip dependencies | |
shell: bash -l {0} | |
run: | | |
source "$CONDA/etc/profile.d/conda.sh" | |
conda activate ./test-env | |
pip install -r requirements.txt | |
- name: build docs | |
shell: bash -l {0} | |
env: | |
SPHINXOPTS: -q | |
run: | | |
source "$CONDA/etc/profile.d/conda.sh" | |
conda activate ./test-env | |
make clean && make dummy && make preview |