REF: Refactoring peds-heatmap and the peds pipeline to split taxonomic labels #206
Workflow file for this run
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# This file is automatically generated by busywork.qiime2.org and | |
# template-repos - any manual edits made to this file will be erased when | |
# busywork performs maintenance updates. | |
name: ci | |
on: | |
pull_request: | |
push: | |
branches: | |
- master | |
jobs: | |
lint: | |
runs-on: ubuntu-latest | |
steps: | |
- name: checkout source | |
uses: actions/checkout@v2 | |
- name: set up python 3.8 | |
uses: actions/setup-python@v1 | |
with: | |
python-version: 3.8 | |
- name: install dependencies | |
run: python -m pip install --upgrade pip | |
- name: lint | |
run: | | |
pip install -q https://github.com/qiime2/q2lint/archive/master.zip | |
q2lint | |
pip install -q flake8 | |
flake8 | |
build-and-test: | |
needs: lint | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest] | |
runs-on: ${{ matrix.os }} | |
steps: | |
- name: checkout source | |
uses: actions/checkout@v2 | |
with: | |
fetch-depth: 0 | |
- name: set up git repo for versioneer | |
run: git fetch --depth=1 origin +refs/tags/*:refs/tags/* | |
- uses: qiime2/action-library-packaging@alpha1 | |
with: | |
package-name: q2-fmt | |
build-target: dev | |
additional-tests: py.test --pyargs q2_fmt | |
library-token: ${{ secrets.LIBRARY_TOKEN }} |