updates to stats

qiime2 · Oct 24, 2024 · 7a7bf7f · 7a7bf7f
1 parent 8ae11f3
commit 7a7bf7f
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Showing 3 changed files with 5 additions and 31 deletions.
diff --git a/q2_fmt/_peds.py b/q2_fmt/_peds.py
@@ -21,8 +21,8 @@
 
 from qiime2 import Metadata
 from q2_fmt._engraftment import _get_to_baseline_ref
-from q2_fmt._util import json_replace
-from q2_stats._visualizer import _make_stats
+from q2_stats.util import json_replace
+from q2_stats.plots.raincloud import _make_stats
 
 
 def peds(ctx, table, metadata, peds_metric, time_column, reference_column,
@@ -605,7 +605,6 @@ def peds_simulation(table: pd.DataFrame, metadata: qiime2.Metadata,
     metadata_df = metadata.to_dataframe()
     reference_series = _check_reference_column(metadata_df,
                                                reference_column)
-
     (metadata_df,
      used_references) = _filter_associated_reference(reference_series,
                                                      metadata_df, time_column,

diff --git a/q2_fmt/_util.py b/q2_fmt/_util.py
diff --git a/q2_fmt/plugin_setup.py b/q2_fmt/plugin_setup.py
@@ -17,8 +17,9 @@
 import q2_fmt
 from q2_types.feature_table import (
     FeatureTable, Frequency, RelativeFrequency, PresenceAbsence)
-from q2_stats._type import (Dist1D, Matched, Independent, Ordered,
-                            Unordered, StatsTable, Pairwise, NestedOrdered)
+from q2_stats.types.types import (Dist1D, Matched, Independent, Ordered,
+                                  Unordered, StatsTable, Pairwise,
+                                  NestedOrdered)
 import q2_fmt._examples as ex
 
 citations = Citations.load('citations.bib', package='q2_fmt')