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Merge pull request #67 from qiime2/cherman2-fix-readme
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Update README install docs
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colinvwood authored Nov 16, 2023
2 parents b5b2503 + 51d39c7 commit 8269406
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Please note that this software is now an alpha release. Initial conda packages are available, but have not been tested in integration against our other plugins yet. For now, create a fresh conda environment for q2-fmt using the following command:

Mac OS instructions
```bash
conda create -n q2-fmt-alpha \
-c conda-forge \
-c bioconda \
-c https://packages.qiime2.org/qiime2/2023.2/tested/ \
q2-fmt q2cli
wget https://data.qiime2.org/distro/fmt/qiime2-fmt-2023.9-py38-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-fmt-2023.9 --file qiime2-fmt-2023.9-py38-osx-conda.yml
conda activate qiime2-fmt-2023.9
conda config --env --set subdir osx-64
```
Linux instructions
```bash
wget https://data.qiime2.org/distro/fmt/qiime2-fmt-2023.9-py38-linux-conda.yml
conda env create -n qiime2-fmt-2023.9 --file qiime2-fmt-2023.9-py38-linux-conda.yml
```
Then activate your new environment as usual.
```bash
conda activate q2-fmt-alpha
conda activate q2-fmt-2023.9
```
Please be aware that `q2-fmt` will be the only visible plugin in this environment.
Please be aware that `q2-fmt`, `q2-stats` and `q2-vizard` will be the only visible plugins in this environment.

## Examples
Example data can be generated using the `--example-data` flag on each action
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